Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d07
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.90 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 200 TPLARGPYGSWCTPETSPIHHPLTQTNSNIETKTQLQDQKRFLEANSTVFPLQKVRLFS 376
           TPLA   Y +      +P HHP        + +T LQ+   F   N  +  L+++++ +
Sbjct: 446 TPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVETILQN-ACFCARNELMMILKEIKIIT 503


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 364 DFLQREDSTVRF*KPFLILKLSFCFDV 284
           +FLQ+EDS++R    +++L ++  + V
Sbjct: 36  EFLQQEDSSIRRDPLYIVLPITVIYAV 62


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +2

Query: 284 NIETKTQLQDQKRFLEANSTVFPLQKVRLFSTSPPPDYISSIEDKK 421
           NIE   Q+  Q      N      + V L +  PP     + E+KK
Sbjct: 497 NIERMKQVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKETEEEKK 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,330
Number of Sequences: 438
Number of extensions: 4744
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)