Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d06
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 33 0.27
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 33 0.27
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 33 0.27
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 3.3
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 29 3.3
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 29 3.3
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 29 3.3
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 29 3.3
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 29 4.3
U97549-7|AAB52848.3| 565|Caenorhabditis elegans Hypothetical pr... 28 5.7
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 494 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 628
P SS T+ S A +S S T+ P SS++YG++TP S SS T++
Sbjct: 156 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 204
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +2
Query: 494 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLLESA 643
P SS T+ S+ + +S++S T+T SS++YG++TP S SS T + + +
Sbjct: 218 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGS 271
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 494 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 628
P SS T+ S A +S S T+ P SS++YG++TP S SS T++
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +2
Query: 494 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLLESA 643
P SS T+ S+ + +S++S T+T SS++YG++TP S SS T + + +
Sbjct: 425 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGS 478
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 494 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 628
P SS T+ S A +S S T+ P SS++YG++TP S SS T++
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +2
Query: 494 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLLESA 643
P SS T+ S+ + +S++S T+T SS++YG++TP S SS T + + +
Sbjct: 425 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGS 478
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 533 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRA 688
+ E T T +SST+ ATTP S +S+ T T + + +PT A
Sbjct: 641 TTTDEPTTTTESSTTGKATTPELSTTSEETTTTELKITTEGSTTTEEPTTTA 692
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSST-----SYGATTPF-FSVSSKNTLTLLESAVSLN 655
P SSE +D++V +S+ +TP SYGA PF ++++ + T + S+ +L
Sbjct: 158 PSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLA 217
Query: 656 ESHVMKPT 679
+ PT
Sbjct: 218 RYPIAPPT 225
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSST-----SYGATTPF-FSVSSKNTLTLLESAVSLN 655
P SSE +D++V +S+ +TP SYGA PF ++++ + T + S+ +L
Sbjct: 196 PSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLA 255
Query: 656 ESHVMKPT 679
+ PT
Sbjct: 256 RYPIAPPT 263
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSST-----SYGATTPF-FSVSSKNTLTLLESAVSLN 655
P SSE +D++V +S+ +TP SYGA PF ++++ + T + S+ +L
Sbjct: 196 PSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLA 255
Query: 656 ESHVMKPT 679
+ PT
Sbjct: 256 RYPIAPPT 263
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSST-----SYGATTPF-FSVSSKNTLTLLESAVSLN 655
P SSE +D++V +S+ +TP SYGA PF ++++ + T + S+ +L
Sbjct: 158 PSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLA 217
Query: 656 ESHVMKPT 679
+ PT
Sbjct: 218 RYPIAPPT 225
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = +2
Query: 476 LSMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLN 655
L ++TP S+ T A S N T TP + + T S S+ + + S N
Sbjct: 161 LQQLTTPRSARTSTRAA--SGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVTPGTSSN 218
Query: 656 ESHVMKPTIRATQSMSSG 709
+ PTIR QS G
Sbjct: 219 HRSRLPPTIRVPQSEPIG 236
>U97549-7|AAB52848.3| 565|Caenorhabditis elegans Hypothetical
protein F15A8.6 protein.
Length = 565
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 162 IIKNGYLQLYRNIFID---VTKLQMAYKLS*PLLSYFNDVCNPHS 287
+ GY+QLY ++F++ + KL + Y D CNP S
Sbjct: 407 VAARGYIQLYSDLFVNNGTYNYAEKMTKLGNKVFMYSFDYCNPRS 451
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,134
Number of Sequences: 27780
Number of extensions: 280984
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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