Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d05
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    34   0.021
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    33   0.028
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    27   1.8  
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|...    27   2.4  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   3.2  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   4.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   5.6  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   5.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   7.4  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    25   7.4  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   9.7  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPM 637
           I +  LT NVT++HI EIF  YG +  I  P+
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPI 132


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRL 646
           R+ +GRL+ +  +  I  +F T GTV+ +  P  R+
Sbjct: 45  RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRV 80


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSI 625
           +++  L +  +   IH +FS YG VK I
Sbjct: 2   LYVSNLPVGTSSSAIHALFSAYGNVKDI 29


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 643
           +++G L+   T + I+ +FS  G ++ I   +DR
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDR 67


>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 387 LIGRRLEIDHQQEKKKNLCYLYQMTKLKLR 476
           L+ RRL  +H+ E++ NL Y+Y+  +L LR
Sbjct: 15  LLCRRLFAEHEVERQSNL-YIYRNPELPLR 43


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 413 SPTGEKKKSVLPLSNDKAKIKEKQ 484
           SP+ + KK  L L ND  +IKEK+
Sbjct: 562 SPSIDMKKESLELKNDTTEIKEKK 585


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 371 KDRRDADREKIRDRSPTGEKKKSVLPLSNDK 463
           K RR A+REK+R     G+K K  L   + K
Sbjct: 479 KARRRAEREKLRSEGLLGKKSKKKLLRESQK 509


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 420 QEKKKNLCYLYQ-MTKLKLRKN 482
           +E KK++ YL + + KLKLRKN
Sbjct: 46  EESKKSIIYLEERLEKLKLRKN 67


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 536 TRIHIGRLTLNVTRDHIHEIFSTYGTV 616
           TR+ +GR+    TR+ + + F  YG +
Sbjct: 4   TRLFVGRIPPQATREDMMDFFKGYGQI 30


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 640
           + +GRL+ NV    + + F  YGT+      MD
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMD 297


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 353 PNKSPLKDRRDADREKIRDRSPTGEKKKSVLPLSNDKAKIKEKQ 484
           P+  P+K  R   R + R  +  GE  +SV      K  +KE++
Sbjct: 103 PDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVKEEE 146


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 432 KNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLDD 557
           KNL + +  +K +  KN N+L++V+ E      + L STL +
Sbjct: 469 KNLDFSHTASKAETYKNSNELENVKREQP--FSELLPSTLQE 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,476
Number of Sequences: 5004
Number of extensions: 31496
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)