Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d05
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 46 2e-05
AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical ... 31 0.96
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 30 1.3
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z49911-12|CAD30448.1| 137|Caenorhabditis elegans Hypothetical p... 29 2.2
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 29 2.2
Z36948-7|CAD30436.1| 137|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical pr... 28 5.1
U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine rece... 28 5.1
AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein. 28 5.1
AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical ... 28 5.1
Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical pr... 27 9.0
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 27 9.0
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 27 9.0
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 27 9.0
AF003389-8|AAC71131.1| 214|Caenorhabditis elegans Hypothetical ... 27 9.0
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 27 9.0
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 655
R+ I L+ NV + H+ EIFS YG +K+++ P DR H H
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNH 172
>AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical
protein M01G5.1 protein.
Length = 889
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 381 VMLIGRRLEIDHQQEKKKNLCY--LYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLD 554
V+ R I HQQ+K+ N Y L + + NR +L+D+R+ + + S L+
Sbjct: 201 VLCSEHRSTIPHQQQKRMNAMYSNLMYFGEFQHTSNRRELKDIRAATETEYDTLVASALE 260
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 572 TRDHIHEIFSTYGTVKSIEFPMDR 643
T D +H+ FS YG +K+I +DR
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDR 90
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSI 625
RI+IGRLT V+ I F YG ++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSI 625
RI+IGRLT V+ I F YG ++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSI 625
RI+IGRLT V+ I F YG ++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z49911-12|CAD30448.1| 137|Caenorhabditis elegans Hypothetical
protein D2089.1b protein.
Length = 137
Score = 29.5 bits (63), Expect = 2.2
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 628
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 2.2
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 628
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z36948-7|CAD30436.1| 137|Caenorhabditis elegans Hypothetical
protein D2089.1b protein.
Length = 137
Score = 29.5 bits (63), Expect = 2.2
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 628
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 2.2
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 628
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical
protein T27F6.4 protein.
Length = 206
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 426 KKKNLCYLYQMTKLKLRKN--RNDLQDVRSENAHHHHDQL 539
KKK+ +T LK RK + L V S + HHHH L
Sbjct: 83 KKKDRSEKNVVTNLKYRKPTANHHLDSVHSSSEHHHHHHL 122
>Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 483 RNDLQDVRSENAHHHHDQLVSTL 551
+N +Q + + AHHHH QLV +
Sbjct: 126 QNLVQQQQQQQAHHHHQQLVGEM 148
>Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 483 RNDLQDVRSENAHHHHDQLVSTL 551
+N +Q + + AHHHH QLV +
Sbjct: 126 QNLVQQQQQQQAHHHHQQLVGEM 148
>Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical
protein W06F12.1a protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 483 RNDLQDVRSENAHHHHDQLVSTL 551
+N +Q + + AHHHH QLV +
Sbjct: 159 QNLVQQQQQQQAHHHHQQLVGEM 181
>U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine
receptor, class t protein13 protein.
Length = 357
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -1
Query: 293 SWMMKMNVMNFLSYWMMTERMTLKNYLMN-----FHYYHCCWSLSHLSFSCFLWVSSSLS 129
SW NV N S++ T+ N L++ + Y C + +S +W+ S
Sbjct: 181 SWFFDPNVGNDPSFYHNIPH-TINNLLVSASSTPLYIYLCYHLIFKFGYSTSMWLYRSKQ 239
Query: 128 QLQAKAIYF*PFSTYYVFIYV 66
Q+ +A+ F +IYV
Sbjct: 240 QIVIQAVILCSFHAVAAYIYV 260
>AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 483 RNDLQDVRSENAHHHHDQLVSTL 551
+N +Q + + AHHHH QLV +
Sbjct: 159 QNLVQQQQQQQAHHHHQQLVGEM 181
>AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical
protein C29G2.4 protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -1
Query: 287 MMKMNVMNFLSYWMMTERMTLKNYLMNFHYYHCCWSLSH-LSFSCFLWVSSSLSQLQAKA 111
M+ N +L+Y + TL L Y+H C+ L +S +W+ S Q+ A+
Sbjct: 189 MIGNNPKIYLNYTTVVNN-TLSTVLTTGMYFHLCYYLIFKFGYSTSMWLYKSKRQIIAQG 247
Query: 110 IY--F*PFSTYYVFIYV 66
I F ST ++ YV
Sbjct: 248 IILTFFHASTSIIYEYV 264
>Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical
protein F54B11.6 protein.
Length = 183
Score = 27.5 bits (58), Expect = 9.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 197 YHCCWSLSHLSFSC 156
YHCCW+ ++ S C
Sbjct: 134 YHCCWNTAYCSVEC 147
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 350 SPNKSPLKDRRDADREKIRDRSPTGEKKKSVLPLSNDKAKIKEK 481
S ++ KDR+ DR + RDR + +S P D+ + + +
Sbjct: 71 SRDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRR 114
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 350 SPNKSPLKDRRDADREKIRDRSPTGEKKKSVLPLSNDKAKIKEK 481
S ++ KDR+ DR + RDR + +S P D+ + + +
Sbjct: 71 SRDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRR 114
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 371 KDR-RDADREKIRDRSPTGEKKKSVLPLSNDKAKIKEK 481
+DR RD DREK+RD+ +++K ++ + +++
Sbjct: 1097 RDRDRDEDREKVRDKEDKAQREKDKKEKERERRRQRDR 1134
>AF003389-8|AAC71131.1| 214|Caenorhabditis elegans Hypothetical
protein F23H11.1 protein.
Length = 214
Score = 27.5 bits (58), Expect = 9.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 197 YHCCWSLSHLSFSC 156
YHCCW+ ++ S C
Sbjct: 160 YHCCWNTAYCSVEC 173
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 371 KDR-RDADREKIRDRSPTGEKKKSVLPLSNDKAKIKEK 481
+DR RD DREK+RD+ +++K ++ + +++
Sbjct: 1097 RDRDRDEDREKVRDKEDKAQREKDKKEKERERRRQRDR 1134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,760,410
Number of Sequences: 27780
Number of extensions: 173954
Number of successful extensions: 778
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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