Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d02
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 41 8e-04
01_01_0229 - 1943473-1943922 41 8e-04
01_01_0231 + 1951047-1951499 40 0.001
02_05_0972 + 33198035-33198277,33198366-33198641 40 0.002
11_02_0041 - 7669692-7670312 37 0.013
01_01_0227 + 1933247-1933699 36 0.023
02_02_0077 - 6586638-6587165 36 0.031
02_01_0222 + 1450233-1450766 35 0.053
01_01_0228 + 1940149-1940649 35 0.070
01_01_0599 - 4448290-4448790 33 0.28
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 32 0.50
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 31 0.87
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 29 2.6
02_05_0494 + 29486960-29487454 29 2.6
05_04_0052 - 17515344-17517353 29 4.6
02_01_0188 - 1262908-1262970,1264185-1264790,1265290-1266030 29 4.6
01_01_0794 - 6184622-6185317 28 6.1
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 28 8.1
08_02_0597 + 19132492-19133230,19133827-19134371,19134563-19135264 28 8.1
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 359 DVQHFSPDEISVKTAEGYVVV-----EAKHEEKQDEHGYVSR---QFVRKYSLPEGADTA 514
D+ +E+ V+ EG V+V + E+K D+ V R QF+R++ LPE A
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 515 NVVSELSTDGILTVTAPRKVIDDKGERVVPIT 610
V + L +G+LTVT P+ + + + I+
Sbjct: 119 QVKAGLE-NGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0229 - 1943473-1943922
Length = 149
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 359 DVQHFSPDEISVKTAEGYVVV-----EAKHEEKQDEHGYVSR---QFVRKYSLPEGADTA 514
D+ +E+ V+ EG V+V + E+K D+ V R QF+R++ LPE A
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 515 NVVSELSTDGILTVTAPRKVIDDKGERVVPIT 610
V + + +G+LTVT P+ + + + I+
Sbjct: 118 QVKASME-NGVLTVTVPKAEVKKPEVKAIEIS 148
>01_01_0231 + 1951047-1951499
Length = 150
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 359 DVQHFSPDEISVKTAEGYVVV-----EAKHEEKQDEHGYVSR---QFVRKYSLPEGADTA 514
D+ +E+ V+ EG V+V + E+K D+ V R QF+R++ LPE A
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 515 NVVSELSTDGILTVTAPRKVIDDKGERVVPIT 610
V + + +G+LTVT P+ + + + I+
Sbjct: 119 QVKAGME-NGVLTVTVPKAEVKKPEVKAIEIS 149
>02_05_0972 + 33198035-33198277,33198366-33198641
Length = 172
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Frame = +2
Query: 392 VKTAEGYVVVEAKHEEKQDEHGYVS-------RQFVRKYSLPEGADTANVVSELSTDGIL 550
+K++ G + K EE++ E Y+ R F RK+ LPE ADT +S +G+L
Sbjct: 92 MKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGG-ISARCENGVL 150
Query: 551 TVTAPRKVIDDKGERVVPIT 610
TVT ++ +K + V +T
Sbjct: 151 TVTVKKRPPPEKKTKSVQVT 170
>11_02_0041 - 7669692-7670312
Length = 206
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 470 QFVRKYSLPEGADTANVVSELSTDGILTVTAPRKVIDDKGE--RVVPITKTG 619
+F R++ +P GAD V + L DG+LTVT P KV +G RVV I G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVP-KVPGHRGREPRVVAIDGAG 190
>01_01_0227 + 1933247-1933699
Length = 150
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +2
Query: 419 VEAKHEEKQDEHGYVSRQFVRKYSLPEGADTANVVSELSTDGILTVTAPRKVIDDKGERV 598
V+ K++E+ S +F R++ LP GA V + + +G+LTVT P++ +
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMD-NGVLTVTVPKEETKKPQLKA 145
Query: 599 VPIT 610
+PI+
Sbjct: 146 IPIS 149
>02_02_0077 - 6586638-6587165
Length = 175
Score = 35.9 bits (79), Expect = 0.031
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 470 QFVRKYSLPEGADTANVVSELSTDGILTVTAPRK-VIDDKGERVVPITKTG 619
+F+R++ LPE AD V +E DG+LTVT +K + K RVV + G
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>02_01_0222 + 1450233-1450766
Length = 177
Score = 35.1 bits (77), Expect = 0.053
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 464 SRQFVRKYSLPEGADTANVVSELSTDGILTVTAPRKVIDDKGERVVPIT 610
S +FVR LP A+T V + L +G+LT+T P+ R++PIT
Sbjct: 129 SERFVRTVRLPPNANTDGVHAALD-NGVLTITIPKDNDRKPHARIIPIT 176
>01_01_0228 + 1940149-1940649
Length = 166
Score = 34.7 bits (76), Expect = 0.070
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Frame = +2
Query: 380 DEISVKTAEGYVVV-----EAKHEEKQDEHGYVSRQ---FVRKYSLPEGADTANVVSELS 535
+E+ V+ EG V+V + EEK ++ R F ++ LP+ A ++V
Sbjct: 65 EEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDA-VVDLVRASM 123
Query: 536 TDGILTVTAPRKVIDDKGERVVPITKTGPVRKESAESK 649
G+LTVT P KV+ DK + V + E+K
Sbjct: 124 DGGMLTVTVP-KVVTDKQPAIAAAAPVPAVVAPAVEAK 160
>01_01_0599 - 4448290-4448790
Length = 166
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +2
Query: 434 EEKQDEHGYVSRQ-----FVRKYSLPEGADTANVVSELSTDGILTVTAPR 568
EEK++ Y+ + F+RK+ LP+ AD + +S + DG+LTVT +
Sbjct: 101 EEKEESCKYLRMERRMGKFMRKFVLPDNAD-VDKISAVCQDGVLTVTVEK 149
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 275 RPWRHTASLARDLGSTIKTEKDKFQINLDVQHFSPDEISVKTAE 406
RPW H + L + I TEK Q N D + S I VK AE
Sbjct: 432 RPWEHKVVNEKPLQNNIDTEK-PLQNNTDTEKSSSSAIDVKLAE 474
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 31.1 bits (67), Expect = 0.87
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Frame = +2
Query: 296 SLARDLGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEHGYVSRQF 475
+L K +KF I +++ ++PD V+ E +V A EK++EH V +
Sbjct: 200 TLVERAAGVAKNWSEKFGIKMEL--YAPDNNEVEMTEAPLVENATATEKKEEH--VDEEE 255
Query: 476 VRKYSLPEGADTANVVSELSTDGILTVTAPRKVIDDKGE---RVVPITKTGPVRKESAE 643
+ PE A+ + + P +V + GE +V KTG V K E
Sbjct: 256 EEEEEDPEEMVPASEEEADAEEVEKEEEDPEEVEKEGGEAEAKVANAAKTGEVEKRKVE 314
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 320 WSLGRGPKTPCAAKVGSSRELSTASSCLLRSRPELAASRSPDPQVCCLAAFY 165
W GR P + ++ LS++SS + R + AA+ P+P VC + A Y
Sbjct: 147 WVSGRRETPPQPRRETAAVLLSSSSSPIHLPRRDDAAAAIPNPHVCSVRACY 198
>02_05_0494 + 29486960-29487454
Length = 164
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 467 RQFVRKYSLPEGADTANVVSELSTDGILTVTAPRK 571
R V ++ LPE A A+ S DG+LTVT P++
Sbjct: 106 RAAVTQFRLPEDA-AADEASARMADGVLTVTVPKR 139
>05_04_0052 - 17515344-17517353
Length = 669
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +2
Query: 494 PEGADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITKTGPVRKESAE 643
P GA V E+ DGIL+V+A + + ER IT +G RK S E
Sbjct: 505 PRGAPQIEVAFEVDADGILSVSAADRA-TGRSER---ITISGDDRKTSRE 550
>02_01_0188 - 1262908-1262970,1264185-1264790,1265290-1266030
Length = 469
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 302 PKTPCAAKVGSSRELSTASSCLLRSRPELAASRSPDPQVCCLAAFYRDILHLPL 141
P P AA VG + ++ SCL + L + + DP+V + F++ + +PL
Sbjct: 371 PPPPGAAVVGYQNRIQSSGSCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPL 424
>01_01_0794 - 6184622-6185317
Length = 231
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 260 LSTASSCLLRSRPELAASRSPDPQVCCLAAFYRDILHLPL 141
L SC SR S S +P+ CC Y ++L + L
Sbjct: 27 LPVDQSCFALSRLSYRRSSSSNPRACCSTTSYLEVLAISL 66
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 193 GSGLRDAANSGRLLNKHDDAVDSSRLLPTLAAHGVFGPRPR-LHNQDGKR*IPDQFG 360
G G D+ NS + DD D SR L +A GP+ R Q+G+R FG
Sbjct: 99 GGGSSDSVNSVLQNEEFDDDDDDSRSLSHDSAQSSPGPQDRSRRTQEGRRGATVTFG 155
>08_02_0597 + 19132492-19133230,19133827-19134371,19134563-19135264
Length = 661
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 603 GTTLSPLSSITFLGAVTVKIPSVDSSETTLAVSAPSGKEYL 481
G SPL LG + + +D S TTL+ S P G+ L
Sbjct: 198 GIGASPLYLAVSLGRLEIARDLLDRSPTTLSYSGPEGQNVL 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,776
Number of Sequences: 37544
Number of extensions: 376429
Number of successful extensions: 1100
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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