Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d01
         (718 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.5  
AY825878-1|AAV70441.1|  161|Anopheles gambiae voltage gated sodi...    23   9.5  
AY825877-1|AAV70440.1|  161|Anopheles gambiae voltage gated sodi...    23   9.5  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 263 VNSSTIQPHVTCQNSIAGHLQIFIFAHRRFVQSN 162
           +NSST +   T QNS    L  + FA   +V+ N
Sbjct: 325 INSSTRRNSTTRQNSTTTALYRYNFAKADYVKLN 358


>AY825878-1|AAV70441.1|  161|Anopheles gambiae voltage gated sodium
           channel protein.
          Length = 161

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 624 AREAREIHQRANLGDVHQ 571
           AR+   I + A LG+VHQ
Sbjct: 130 ARKGNPIEETAELGEVHQ 147


>AY825877-1|AAV70440.1|  161|Anopheles gambiae voltage gated sodium
           channel protein.
          Length = 161

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 624 AREAREIHQRANLGDVHQ 571
           AR+   I + A LG+VHQ
Sbjct: 130 ARKGNPIEETAELGEVHQ 147


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,524
Number of Sequences: 2352
Number of extensions: 16474
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)