Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d01
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 209 1e-54
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 209 1e-54
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 188 3e-48
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 188 3e-48
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 187 6e-48
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 182 3e-46
Z70783-11|CAA94860.2| 782|Caenorhabditis elegans Hypothetical p... 30 1.9
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat... 28 7.7
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi... 28 7.7
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 209 bits (511), Expect = 1e-54
Identities = 88/184 (47%), Positives = 124/184 (67%)
Frame = +3
Query: 165 ALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSN 344
A +K ++K+ +L+ A Y+W+DG+G N+R+K RTFDF P D + LPIW FDGS+
Sbjct: 10 ATDKQVLQKFLNLDQK-GMYQALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSS 68
Query: 345 TAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV 524
T QA +SD ++ P IY DPFR+G + LV+ +TY +PT++N+R+ C + EK
Sbjct: 69 TGQAEGADSDVYLKPVAIYPDPFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAAD 128
Query: 525 EEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYA 704
+ PWFG QE+ L DG P GWP GFP P GPYYC +G++K+ RD++EA YR CLYA
Sbjct: 129 QHPWFGMEQEYTLLDIDGHPFGWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYA 188
Query: 705 GVQL 716
G+Q+
Sbjct: 189 GIQI 192
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 209 bits (511), Expect = 1e-54
Identities = 88/184 (47%), Positives = 124/184 (67%)
Frame = +3
Query: 165 ALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSN 344
A +K ++K+ +L+ A Y+W+DG+G N+R+K RTFDF P D + LPIW FDGS+
Sbjct: 13 ATDKQVLQKFLNLDQK-GMYQALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSS 71
Query: 345 TAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV 524
T QA +SD ++ P IY DPFR+G + LV+ +TY +PT++N+R+ C + EK
Sbjct: 72 TGQAEGADSDVYLKPVAIYPDPFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAAD 131
Query: 525 EEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYA 704
+ PWFG QE+ L DG P GWP GFP P GPYYC +G++K+ RD++EA YR CLYA
Sbjct: 132 QHPWFGMEQEYTLLDIDGHPFGWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYA 191
Query: 705 GVQL 716
G+Q+
Sbjct: 192 GIQI 195
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 188 bits (459), Expect = 3e-48
Identities = 77/161 (47%), Positives = 106/161 (65%)
Frame = +3
Query: 234 YVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEVIYHDPF 413
Y+W+D T N+R K +TFDF PK DLPIW FDG++T Q+ + SD +I P +Y DPF
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94
Query: 414 RRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEVEEPWFGFNQEFILTSSDGRPLGW 593
R G + + L +T + +P +N R+ C EK + +EPWFG QEF L +D P W
Sbjct: 95 RPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNW 154
Query: 594 PVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQL 716
PV GFPAP GPYYC +GSD++ R ++EA YR C+YAG+++
Sbjct: 155 PVNGFPAPQGPYYCGVGSDRVFGRHILEAHYRACMYAGIKI 195
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 188 bits (458), Expect = 3e-48
Identities = 78/187 (41%), Positives = 118/187 (63%)
Frame = +3
Query: 156 TPIALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFD 335
T + L +A + + L A+YVW+DGTG LR+K RTF+ P+ + PIW +D
Sbjct: 8 TRLPLGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYD 67
Query: 336 GSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEK 515
GS+T QA NSD ++ P ++ DPF +G+++LV+ +T +PT++NHR+NC I +K
Sbjct: 68 GSSTGQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKK 127
Query: 516 GEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCC 695
PWFG QE+++ D PLGWP G+PAP G YYC +G+D+ R+++E YR C
Sbjct: 128 VAEHHPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGVGADRAFGREVVETHYRAC 187
Query: 696 LYAGVQL 716
L+AG+ +
Sbjct: 188 LHAGINI 194
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 187 bits (456), Expect = 6e-48
Identities = 83/187 (44%), Positives = 116/187 (62%)
Frame = +3
Query: 156 TPIALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFD 335
T + L A + ++ L I A+YVW+DGTG NLRSK RTFD +PK +D PIW +D
Sbjct: 8 TRMPLGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYD 67
Query: 336 GSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEK 515
GS+T QA +SD ++ P Y DPF G + LV+ DT QPT+++HR+ C I +
Sbjct: 68 GSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMHE 127
Query: 516 GEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCC 695
PWFG QE+++ D PLGWP GFP P G YYC++G+D+ R+++E YR C
Sbjct: 128 IRDTRPWFGMEQEYLIVDRDEHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRAC 187
Query: 696 LYAGVQL 716
L+AG+ +
Sbjct: 188 LHAGLNI 194
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 182 bits (442), Expect = 3e-46
Identities = 77/187 (41%), Positives = 118/187 (63%)
Frame = +3
Query: 156 TPIALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFD 335
T + L +A + + L A+YVW+DGTG +LR+K RT + P+ + PIW +D
Sbjct: 8 TRLPLGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYD 67
Query: 336 GSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEK 515
GS+T QA+ NSD ++ P ++ DPF G ++LV+ DT +PT++NHR+ C + +K
Sbjct: 68 GSSTGQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKK 127
Query: 516 GEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCC 695
++PWFG QE+++ D PLGWP G+PAP G YYC IG+D+ R+++E YR C
Sbjct: 128 VSDQQPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGIGADRAFGREVVETHYRAC 187
Query: 696 LYAGVQL 716
L+AG+ +
Sbjct: 188 LHAGITI 194
>Z70783-11|CAA94860.2| 782|Caenorhabditis elegans Hypothetical
protein ZK856.12 protein.
Length = 782
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 336 GSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTS 476
GSN + P++S + P+ I H+ +RGNH + + + N PT+
Sbjct: 620 GSNAPKTAPNDSVNSVAPDDI-HETDKRGNHCKSVTEDPKDNKDPTA 665
>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
endocytosis protein6, isoform a protein.
Length = 1093
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 307 IKIYRSGTLMAAILRKLTRTIPTRLY 384
+++YRSG+ M ILRK T +I TR Y
Sbjct: 168 LQLYRSGSEMRTILRKET-SISTRFY 192
>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans
receptor-mediated endocytosis 6 protein.
Length = 1093
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 307 IKIYRSGTLMAAILRKLTRTIPTRLY 384
+++YRSG+ M ILRK T +I TR Y
Sbjct: 168 LQLYRSGSEMRTILRKET-SISTRFY 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,914,515
Number of Sequences: 27780
Number of extensions: 383058
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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