Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c24
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    29   0.41 
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    29   0.72 
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   2.2  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   3.8  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   3.8  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    26   5.1  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   6.7  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   6.7  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   8.9  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   8.9  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 309 SISYEKPTNVLQRTHKDLSDVTPFLSNTFNLAAYVNHSKTLQNLI 443
           S++ E+   +     K  SD +  + N+FN+ A  N    LQN I
Sbjct: 53  SVAKERQKKISDPARKFFSDFSKLIDNSFNVFAKKNEGDLLQNAI 97


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +3

Query: 225 RILKIHNAIPARSMCGYLQVEPGESEICSISYEKPTNVLQRTHKDLSDVT-----PFLSN 389
           R L IHN +  R      +++ G S++C++++ K +N +  TH    +       P L N
Sbjct: 316 RCLTIHNTLTGRLQN---KLDTG-SQVCNMAWSKTSNEIVTTHGFAKNQVSLWKYPSLKN 371

Query: 390 TFNLAAYVN 416
             NL A+ N
Sbjct: 372 IANLTAHTN 380


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 378 FLSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYIIEKLLKLDFEKNMKSHIVFLSDY 557
           F+   F++    +  K+  N+++LNVN+S  +K    I+  L    E  M+      S Y
Sbjct: 184 FIYPRFHVVVAESLEKSPANVVELNVNLSDSQK---TIQSCLLTCIESTMRELRRLNSAY 240

Query: 558 VNME 569
           ++ME
Sbjct: 241 LDME 244


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +3

Query: 381 LSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYIIE-KLLKL-DFEKNMKSHIVFLSD 554
           +++ FN+A +   +K   + +D+++ +  F+K   ++     K+ D +   KSH VFL +
Sbjct: 250 VNHEFNIALFKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKISDGDIPYKSHQVFLQE 309

Query: 555 YVNMEQMGEFFTKNPM 602
             N     + ++ N +
Sbjct: 310 LQNKYSEIKTYSSNKL 325


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +3

Query: 105 HQAISNKTRPKQLW---KIEKVSVEYTFKLSLFWEMAICKLFIRI 230
           HQ + +K R  QLW   +I K    Y  K   F E  I ++   I
Sbjct: 104 HQVLESKRRQMQLWEASQIGKAETAYDPKTQTFTESLITRMIDNI 148


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 423 KTLQN-LIDLNVNISKFEKKPYIIEKL----LKLDFEKNMKSHIVFLSD 554
           ++LQN +ID    +  FE+KP ++EK     LK+   K + SH+ F  D
Sbjct: 546 RSLQNSIIDTERLLEIFEEKPTVVEKPNAPDLKVTQGKVIFSHVSFAYD 594


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 453 VNISKFEKKPYIIEKLLKLDFEKNMKSHIVFL 548
           +N+ + E +P  + KLLK   EK  KS++V L
Sbjct: 91  INVGEKELEPLSVAKLLKATVEKE-KSNLVLL 121


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 333 NVLQRTHKDLSDVTPF----LSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYII 491
           + +   +K ++D+ P     L+ +FN+AA    S    +LIDL + IS +  + Y +
Sbjct: 636 DTIHSVYKKVTDLLPDSLNDLAGSFNIAADGISSPMAYSLIDLLIVISPYLNQDYAV 692


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 23  CIYAFRAYVLIFCFFHCE 76
           CI+    Y  +FCF HC+
Sbjct: 230 CIFCTNFYEPVFCFEHCK 247


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +3

Query: 393 FNLAAYVNHSKTLQNLIDLNVNISKFEKKPYIIEKLLKLDFEKNMKSHIVFLSD 554
           F LAA ++  K L  ++ L   ++   KK + IEK L ++   N+  ++VF+++
Sbjct: 687 FTLAASLSDQKFLNLVVLLQGGLNGLSKKLHFIEK-LNIEL-LNLLINVVFVTE 738


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -1

Query: 134 WSSLVTYCLMLILLGKRLIFRNEKSKILKHTHEMHKYKNITFF 6
           WSS++++    + L + L+F+   S +           N+T F
Sbjct: 2   WSSIISFLFFSVALCQPLLFQKRSSNVSDFISFNASLPNVTIF 44


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 363 SDVTPFLSNTFNLAAYVNHSKTLQNLIDL 449
           SD   F+S  +NLA Y N  K  +N + L
Sbjct: 638 SDAHRFVSKLWNLARYFNQYKDKENPLKL 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,532
Number of Sequences: 5004
Number of extensions: 50865
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)