Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c24
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70750-10|CAA94746.1|  439|Caenorhabditis elegans Hypothetical p...    46   2e-05
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    36   0.024
Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z93379-8|CAC35812.2|  354|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U41995-6|AAA83463.2|  419|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF003137-2|AAB93641.2|  464|Caenorhabditis elegans Temporarily a...    28   4.7  
AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin prote...    28   6.2  

>Z70750-10|CAA94746.1|  439|Caenorhabditis elegans Hypothetical
           protein C50F4.12 protein.
          Length = 439

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
 Frame = +3

Query: 273 YLQVEPGESEICSISYEKPTNVLQRTHKDLSDVTPFLSNTFNLAAYVNHSKTLQNLIDLN 452
           Y ++E  E E+      +P +       D S++ P  S++  +  +VNHS  L+ L+D+ 
Sbjct: 107 YRKIEYTEGELDHTDLTEPASPSNPHPFDPSELPPVHSHS--IVPFVNHSPLLRFLVDIG 164

Query: 453 VNISKFEKKPYIIEKLLKLDFEKNMKSHIVFLSDYVNMEQ--MGEFFTKNPMIFCE 614
           V++++ E    + + LL+L  E +++  I  + + +  E   +G + T+NP    +
Sbjct: 165 VDLAEIENTTTVGKHLLRLQIE-DVRQKIELMQNEIGFENEAIGPYLTRNPFFLIQ 219


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +3

Query: 381 LSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYI--IEKLLKLDFEKNMKSHIVFLSD 554
           LS  +NL   ++H + L +L  LN+N ++ EK   +  +  L+ LD   N  + I  LS+
Sbjct: 15  LSLRWNLLKKIDHFQCLTSLTRLNLNDNQIEKLENLETLVNLVFLDVSYNRITKIEGLSE 74

Query: 555 YVNMEQMGEFFTKNPMIFCEHLE 623
            +N+E++      N +I  E LE
Sbjct: 75  LINLEEL--HLVHNKIITIEGLE 95


>Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical
           protein Y48E1B.16 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 68  HCEKSAFYLIELASSNK*QD*TKTTLEDRKGVSRIYF*IEFILGNGHLQIIYKNFEN 238
           HCE+   +L  L S +K  +   T+L D + +S ++F +   +G G     Y NF N
Sbjct: 255 HCEELGSHLAYLDSESK--NTYATSLIDSQNISMVWFGLRTEVGLGSGSDTYSNFSN 309


>Z93379-8|CAC35812.2|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.11 protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 28  LCISCVCFNILLFSLRKISLLPNRISIKQ*VTRL 129
           + IS VC  + LF  R  SLL NR  I +  TR+
Sbjct: 116 IAISAVCSYVYLFESRSSSLLQNRFRISRKSTRI 149


>U41995-6|AAA83463.2|  419|Caenorhabditis elegans Hypothetical
           protein E02C12.6 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 312 ISYEKPTNVLQRTHKDLSDVTPFLSNTFNLAAYVNHSKTLQNLIDLNVNISK 467
           +S  +P N +  TH    DV   L N+    A    +KT  N+ DL   +S+
Sbjct: 1   MSLYEPANGILETHVTWEDVEKDLQNSLGTKATFGENKTASNISDLKGFMSR 52


>AF003137-2|AAB93641.2|  464|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 146 protein.
          Length = 464

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
 Frame = +3

Query: 285 EPGESEICSISYEKPTNVLQRTHKDLSDVTPFLSNTFNLAAYVNHSKTLQNLIDLNVNIS 464
           +P E +IC + + + T ++           PFL N      +VN+S+   + +  N    
Sbjct: 83  KPYECDICGMRFTQRTPMINHFRVQHMGDLPFLCNFGCGKRFVNNSRRTAHELSHNGLKR 142

Query: 465 KFEKKPYI--IEKLLKLDFEKNMKSHIVFLSDYVNMEQMGEFFTKNP 599
               +PY+  ++K++    + ++ S+   L++Y++   +   F  +P
Sbjct: 143 AGPARPYLKPVKKIVCPSMDMDILSNSA-LANYISPPTIDSIFQSDP 188


>AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin protein
           15 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 185 QFKSIFY*HLFYLPELFWSSL 123
           QF  +F   LFYLP L+WS++
Sbjct: 103 QFILVFLAFLFYLPYLYWSTV 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,514
Number of Sequences: 27780
Number of extensions: 271960
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)