Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c23
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115...    28   3.4  
03_05_0366 - 23505755-23506441                                         28   3.4  
09_02_0628 + 11364169-11364233,11365135-11365648                       27   5.9  
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468           27   5.9  
05_03_0575 - 15643819-15644295                                         27   5.9  
08_01_0187 + 1572014-1572180,1572266-1572422,1573047-1573097,157...    27   7.8  

>04_03_0566 +
           17209455-17209565,17210159-17210203,17211456-17211569,
           17211943-17212081,17212324-17212415,17213245-17213517
          Length = 257

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 131 KVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGK 271
           K+V++ W    +  E WE  +      +P H ++D++ +   + TG+
Sbjct: 10  KMVANSWHPFEEAAEPWEKSTGGHATRKPEHFLSDSYRINETMTTGE 56


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 241 CFSNGSRNGKRATTRYGEYGWSRGSW 318
           C S+G R+G     R G  GW R  W
Sbjct: 78  CGSSGGRHGGHRRQRQGGSGWERHPW 103


>09_02_0628 + 11364169-11364233,11365135-11365648
          Length = 192

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 113 HIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHN-IADTHALVTAVGTGKGLRPGM 289
           H A F + +  +   I  G+  WE   +  + MQPT++ I  +   ++ V T   + P M
Sbjct: 101 HFANFEQQLRQL--DIYYGKNKWEYSPLSLSSMQPTYSPIVASLCNISIVATNTSVLPPM 158

Query: 290 ANMV 301
            N +
Sbjct: 159 LNAI 162


>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
          Length = 1078

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 88  QTNLDYIKELIIHSLIEFNDD 26
           Q  +DY KELI+ +L+E +DD
Sbjct: 474 QLGMDYYKELIMRNLLEPHDD 494


>05_03_0575 - 15643819-15644295
          Length = 158

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 276 SPFPVPTAVTKACVSAMLCVGCIPVDL 196
           SP P  +A   ACV+  + VGC P+ L
Sbjct: 117 SPTPERSADMGACVAIAVAVGCTPLSL 143


>08_01_0187 +
           1572014-1572180,1572266-1572422,1573047-1573097,
           1573371-1573463,1573595-1573681
          Length = 184

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 116 IAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKG 274
           IAQF KV++  W    + R  W+ + +  +G  P+ + A   AL  AVG  +G
Sbjct: 46  IAQFIKVLT-TW--YKENR--WDAKQLVGSGGMPSSHSATVVALAVAVGLQEG 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,554,298
Number of Sequences: 37544
Number of extensions: 186184
Number of successful extensions: 454
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)