Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c23
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    29   2.3  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
            C47E8.8 protein.
          Length = 1675

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = -1

Query: 139  DNFSELSNVFLIIMLILQTNLDYIKELIIHSLIEFNDDMI 20
            DN+S  + V +I +L ++ + D++KEL  ++++  +D+ +
Sbjct: 1175 DNYSIEARVRIIFVLSVKVDADFLKELRKNAVVRVDDEQL 1214


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
            protein C47E8.8 protein.
          Length = 1675

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = -1

Query: 139  DNFSELSNVFLIIMLILQTNLDYIKELIIHSLIEFNDDMI 20
            DN+S  + V +I +L ++ + D++KEL  ++++  +D+ +
Sbjct: 1175 DNYSIEARVRIIFVLSVKVDADFLKELRKNAVVRVDDEQL 1214


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 211 HTCRSH*LSFPVFAAFGYNFPNVTD-NFSELSNVFLIIMLILQTNLDYIKELIIHSLI 41
           H C+   +S+ VF +  +NF  V + N S+++ V + ++     N+ YI     H LI
Sbjct: 67  HFCQMVKVSYLVFVSACFNFILVVNINSSQINIVLIALLFFALFNVLYIITQAFHVLI 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,457,764
Number of Sequences: 27780
Number of extensions: 169562
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)