Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c22
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    28   1.1  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   3.3  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    25   9.9  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.9  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    25   9.9  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    25   9.9  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 254 EAISFSLLHRPKQILGTDPRIVQQPCEKPKDTER 355
           E  ++++L +P  +  TDP +V Q    PK  ++
Sbjct: 391 EETAYAILKKPSSLSTTDPTLVPQSSSTPKSAQK 424


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +2

Query: 296 LGTDPRIVQQPCEKPKDTEREIAQRTRPRIVMTPAVSMDDIENPRARDILCNDMYTSDTS 475
           LG    + Q+PCE P     E  +R   + + +  ++ DD E    + +  +D++ S++ 
Sbjct: 166 LGQPVLLTQRPCETPPTPSIEALKR---KELSSVTLTYDDEEKKTIKILQLSDLHYSNSD 222

Query: 476 KGLRE 490
           +  R+
Sbjct: 223 RPCRD 227


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -2

Query: 617 KKLIPCATQEIRMEVAVSPKLQGWQQLVIQ 528
           +K I    ++++ E+  + +LQGW++L I+
Sbjct: 50  EKYIEERDRKMKYEIECNERLQGWKKLAIE 79


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 312 LGSVPNICFGLCNKLKDIASAFQSESVWTSLSGRSFGGALRGFSLYTVIDC 160
           L ++PN  F L + +  + + F S S  T  S RS    L   +LY  I C
Sbjct: 313 LNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHLVLSALYLYIGC 363


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 160  WPNFAISIVSTVCCAVIEEH 101
            W  FA+S  S VC A I EH
Sbjct: 976  WRLFAVSAHSNVCAARIYEH 995


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -2

Query: 617 KKLIPCATQEIRMEVAVSPKLQGWQQLVIQ 528
           +K I    ++++ E+  + +LQGW++L I+
Sbjct: 50  EKYIEERDRKMKYEIECNERLQGWKKLAIE 79


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 486 LSPLLVSLVYMSLHNISLALGFSMSSILTAGVITM 382
           L PLLV + ++S     L+LG  + + + AG +TM
Sbjct: 162 LIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTM 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,397
Number of Sequences: 5004
Number of extensions: 53918
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)