Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c22
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1023 + 8840754-8842988,8843189-8843362                           31   0.63 
04_04_1692 + 35395409-35395535,35395632-35395849,35397302-35398489     29   3.4  
10_08_0526 + 18547154-18547197,18547320-18547467,18547558-185476...    29   4.5  
03_05_0521 + 25160245-25160883                                         28   5.9  
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    28   5.9  
08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065           28   7.8  

>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 329 CEKPKDTEREIAQRTRP--RIVMTPAVSMDDIENPRARDILCND 454
           C+   D + E A  T P   +++T  V MDD+ N  A++ LC D
Sbjct: 250 CDISSDKQPEEANDTIPSKNLMITAGVCMDDVSNYSAKEGLCED 293


>04_04_1692 + 35395409-35395535,35395632-35395849,35397302-35398489
          Length = 510

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -1

Query: 528 GKGALTLKYEVTASLSPLLVSLVYMSLHNISLALGFSMSSILTAG 394
           G G LT+   V AS S   V ++Y+SL+ ++LA GF     L  G
Sbjct: 116 GYGMLTVASSVVASKSQ--VGILYVSLYLVALAQGFDKPCGLALG 158


>10_08_0526 +
           18547154-18547197,18547320-18547467,18547558-18547604,
           18548216-18548270,18548365-18548403,18548517-18548688,
           18549135-18549201,18549378-18549434,18549637-18549873,
           18551549-18551629,18551803-18551935
          Length = 359

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -1

Query: 621 SQETDSMRHS--GDTYGGCSFAKATGLAAAGNPGKGALTLKYEVTASLSPLLVSLVYMSL 448
           SQE   + H    D  GGC        A    PG  A  LKY++        V LVY+SL
Sbjct: 297 SQEALELLHMIMADDGGGCRVCPVRP-AKIRRPGSAAKALKYKLNRMSKNRTVLLVYISL 355

Query: 447 HNIS 436
             +S
Sbjct: 356 SWLS 359


>03_05_0521 + 25160245-25160883
          Length = 212

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 645 QWALNCFPSQETD--SMRHSGDTYGGCSFAKATGLAAAGNPGKGA 517
           QW  + FPS      S RH G   GG    +A  +A A  PGKGA
Sbjct: 10  QW--DSFPSTSISCKSTRHKGRAGGG---GRAAAVAGAREPGKGA 49


>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
            22709162-22709206,22709367-22709445,22709522-22709595,
            22709703-22709809,22711116-22711301,22711882-22711920,
            22712020-22712086,22712207-22712281,22713113-22713347,
            22713425-22713755,22714530-22714710,22714810-22714950,
            22715041-22715302,22715503-22715892,22717179-22717735,
            22718421-22718557,22718672-22718853,22718959-22719339,
            22719420-22719545,22719635-22719700,22720056-22721839,
            22721914-22722193,22722386-22722616,22723067-22723588,
            22723683-22723815,22723937-22724193
          Length = 2405

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -1

Query: 303  VPNICFGLCNKLKDIASAFQSESVWTSLSGRSFGGALRGFSLY 175
            V N+ + +CN    +         W+SLS       L GF L+
Sbjct: 2181 VQNLSYSVCNLHTLVKQTTSPHQFWSSLSSSDHSAFLEGFELF 2223


>08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065
          Length = 393

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 576 GCSFAKATGLAAAGNPGKGALTLKYEVTASL 484
           GC    A   A AG   +GAL LK    AS+
Sbjct: 33  GCECGNAAAAAVAGEDARGALRLKLVAIASI 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,910,170
Number of Sequences: 37544
Number of extensions: 355808
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)