Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c22
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    28   5.3  
U89245-1|AAB49459.1|  612|Caenorhabditis elegans transcription f...    28   6.9  
U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF003141-10|AAK21487.1|  612|Caenorhabditis elegans Uncoordinate...    28   6.9  
AF001272-1|AAB84235.1|  612|Caenorhabditis elegans enhancer of s...    28   6.9  
AF001271-1|AAB84234.1|  612|Caenorhabditis elegans enhancer of s...    28   6.9  

>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 317 VQQPCEKPKDTEREIAQRTRPRIVMTPAVSMDDIENPRARDILCNDMYTSDTSK 478
           +Q+P   P   E        P +  TP  S+DD+    ARD L ++    D  K
Sbjct: 293 IQEPTTTPAPLEAPAPVENAPNLP-TPTFSVDDLMAQAARDALNSNSIVPDAPK 345


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 317 VQQPCEKPKDTEREIAQRTRPRIVMTPAVSMDDIENPRARDILCNDMYTSDTSK 478
           +Q+P   P   E        P +  TP  S+DD+    ARD L ++    D  K
Sbjct: 293 IQEPTTTPAPLEAPAPVENAPNLP-TPTFSVDDLMAQAARDALNSNSIVPDAPK 345


>U89245-1|AAB49459.1|  612|Caenorhabditis elegans transcription
           factor UNC-37 protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 339 GFSQGC*TILGSVPNICFGLCNKLKDIASAFQSESV-WTSLSGRSFGGA 196
           GF  G   +LG +PN+ FG+   +  + + F S  V     +G S GGA
Sbjct: 113 GFPPGAAGMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGGSSGGA 161


>U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical
           protein ZK563.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 463 SVHVVT*YIPGSWIFNVVHTDCRGHHYAGSGPLSDFSFCVFRFFARLLNN 314
           SVHV+  +   + + NV   + + + Y G G L+D  F   R   ++L +
Sbjct: 22  SVHVIFRHGARAPVLNVTSEEAKSYFYRGLGQLTDEGFEQARLMGKVLRD 71


>AF003141-10|AAK21487.1|  612|Caenorhabditis elegans Uncoordinated
           protein 37 protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 339 GFSQGC*TILGSVPNICFGLCNKLKDIASAFQSESV-WTSLSGRSFGGA 196
           GF  G   +LG +PN+ FG+   +  + + F S  V     +G S GGA
Sbjct: 113 GFPPGAAGMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGGSSGGA 161


>AF001272-1|AAB84235.1|  612|Caenorhabditis elegans enhancer of
           split groucho protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 339 GFSQGC*TILGSVPNICFGLCNKLKDIASAFQSESV-WTSLSGRSFGGA 196
           GF  G   +LG +PN+ FG+   +  + + F S  V     +G S GGA
Sbjct: 113 GFPPGAAGMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGGSSGGA 161


>AF001271-1|AAB84234.1|  612|Caenorhabditis elegans enhancer of
           split groucho protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 339 GFSQGC*TILGSVPNICFGLCNKLKDIASAFQSESV-WTSLSGRSFGGA 196
           GF  G   +LG +PN+ FG+   +  + + F S  V     +G S GGA
Sbjct: 113 GFPPGAAGMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGGSSGGA 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,329
Number of Sequences: 27780
Number of extensions: 306480
Number of successful extensions: 801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)