Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28c21
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0393 + 17255315-17256019,17256107-17257909 29 2.4
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 29 3.2
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 28 5.6
09_05_0005 + 20026190-20026343,20026483-20026682,20026918-200273... 28 7.5
04_04_1614 + 34786296-34786315,34787432-34788347,34788426-347889... 28 7.5
06_01_0122 + 944353-944451,944547-945080 27 9.9
01_04_0120 + 16242220-16242483,16242538-16243424,16244604-162452... 27 9.9
>09_04_0393 + 17255315-17256019,17256107-17257909
Length = 835
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +3
Query: 327 ATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFYTS 506
AT +D+ ELD+++K +SQ T+ + ++ ++ + K V+ L T
Sbjct: 334 ATALEDLQSVKMELDQLQKEYTSLISQRDNTETKARKAIVASQEIEK-VVQDLTIKVIT- 391
Query: 507 MRDFDLYKQRFNEILAKNKE--ESLVDMEDFINDMFQNMMSSVDIKV 641
M+D + + N ++A+ K+ +L +D +N +QN + +D +V
Sbjct: 392 MKDL-ITTSQANHVIAEGKKINAALAYQQDMVN--WQNELKQIDDEV 435
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Frame = +1
Query: 190 VKERPSSLIQM*TFRKVPHSPTSIHLQSITNDMSTMKCPLGNPI*VLPPIRMSY*QIQNS 369
V E P S + P + S L S + + T P+G+ PP + Q+
Sbjct: 692 VSESPPSNSIGYFYGSTPENHRSSRLSSSPHGIPTGSSPVGSVPKSFPPFQHPSHQLLEK 751
Query: 370 TKSKREFMRLFHKNCKPTRAHLSVS-TRT*NSLRRL*KSYLR 492
K +++ F C R L + + NSL R YLR
Sbjct: 752 NKFQQQRYNKFKNRCIAERKKLGIGCSEEMNSLYRFWSYYLR 793
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +3
Query: 270 KYYERYEHDEVPVRESDLSATTDKDVILTNSE-LDK-IEKRVYETVSQELQTDESSSISL 443
K+ ++ E + + E DL+ ++ + ++ D ++K E++ QE+++ SS S+
Sbjct: 30 KWKKKDEKKDDDLSEEDLALKEQLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSV 89
Query: 444 DSNIKFFKTTVEKLFENFYTSMRDFDLYKQRFNEILA 554
+KF + L F T DL K+ +IL+
Sbjct: 90 PKPLKFLRPHYGTLKSYFETMPESSDL-KRYMADILS 125
>09_05_0005 +
20026190-20026343,20026483-20026682,20026918-20027309,
20027646-20027778,20027858-20027942,20028216-20028235
Length = 327
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 435 ISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRFNEILAKNKE 566
+ L+S + K +EKL E T+ R FNE+LA+N E
Sbjct: 269 LELESKVLVLKIEIEKLSEKLATAQR-------TFNELLAQNNE 305
>04_04_1614 +
34786296-34786315,34787432-34788347,34788426-34788950,
34789065-34789442,34790435-34790740
Length = 714
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/66 (24%), Positives = 38/66 (57%)
Frame = +3
Query: 360 SELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRF 539
SE D ++ RV L+ ES + + +KF K+ ++++ +NF + +++ +L +++
Sbjct: 490 SEADDLDSRV-----AALRATESEKVQQE--LKFVKSQMDQIIKNFESQLKNSEL--EQY 540
Query: 540 NEILAK 557
N ++ K
Sbjct: 541 NSLMRK 546
>06_01_0122 + 944353-944451,944547-945080
Length = 210
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 355 VSMTSLSVVALKSDSLTGTSSCSYRS*YFGD---EYSWDCEELFETFTSELKTM 203
V ++L ++S LT + C+Y + D +YS + E+LF+ +ELK M
Sbjct: 37 VGSSNLESHEIESSDLTLSRYCAYLVVFQPDLLPDYSENAEDLFQDMKTELKDM 90
>01_04_0120 +
16242220-16242483,16242538-16243424,16244604-16245264,
16245582-16245943,16246071-16246140,16246666-16246740
Length = 772
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +1
Query: 172 TVSVLHVKERPSSLI--QM*TFRKVPHSPTSIHLQSITNDMSTMKCPLGNPI*VLPPIRM 345
T V+ + E S+LI ++ +K P PT I C LG I V+P +
Sbjct: 319 TTEVVKLTEHCSNLILHKLPEKKKDPGCPT-ITCSIRAQQFDQALCDLGASISVMPKLTS 377
Query: 346 SY*QIQNSTKSKREFMRLFHKNCKPTRAHLSVSTRT 453
++++ +R RLF + P+ H STR+
Sbjct: 378 L---TSSTSRIRRRLSRLFKGSGSPSSRHDESSTRS 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,368
Number of Sequences: 37544
Number of extensions: 242710
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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