Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c19
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   5.0  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    26   6.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.7  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    25   8.7  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.7  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   8.7  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 482  LCKYVYKPMYLHNVSICDNKHFSKNN 405
            L K +  P+Y  ++  CDNK + + N
Sbjct: 971  LKKPITLPLYADHIDFCDNKTYEREN 996


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 310 SFGGDILTRSHGVSHGTDPLSTQPEISR 227
           SF  D L++ HG+    DP +T P+ S+
Sbjct: 350 SFYVDRLSQEHGILKSKDPKATLPDASQ 377


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 146 KSSLVCLQTAPSGPSDDDNN-SVKNVALPRNF 238
           KS        PS P+DD+NN  V+N +  R F
Sbjct: 248 KSIEAAANAVPSTPADDENNEEVENRSTTRRF 279


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 516 CLETDLWVQKKRLS*K*LESIRRQIVRE 599
           C+ ++ W + KRLS K +E  RR+ + E
Sbjct: 79  CVGSEEWYKAKRLSHKEVERRRREAISE 106


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 677 FLIAKQRACGYFGYRTLYD 733
           F I K+R C Y  +RTLY+
Sbjct: 7   FSIRKKRECSYPTFRTLYE 25


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -2

Query: 452 LHNVSICDNKHFSKNNNFIKISDLRQSRQ--CRRRSAFS*RQRLILKLPQLRGRHSYTES 279
           L N + CD+  FS NN+    S L   R   C R+       RL+L   +    H  ++ 
Sbjct: 454 LSNFNTCDSLSFSSNNSLYGYSTLLHPRNPICVRQ-RIGRGGRLMLDRTRALPVHRLSKP 512

Query: 278 RGISRDRPTFD 246
           +    DR  FD
Sbjct: 513 KSRVEDRWLFD 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,831
Number of Sequences: 5004
Number of extensions: 62481
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)