Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28c19
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339... 32 0.42
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796... 31 0.74
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408... 31 0.97
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757 31 1.3
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286... 31 1.3
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 30 2.2
06_02_0155 + 12380452-12381012 29 3.9
06_03_1270 - 28867654-28868076,28868394-28868785,28869438-288695... 29 5.2
04_04_1269 + 32272290-32272321,32272924-32274143,32274390-322744... 29 5.2
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843... 28 6.9
11_01_0384 - 2908789-2908991,2909104-2909464,2909574-2909731,290... 28 9.1
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 28 9.1
>04_03_0870 +
20431215-20431419,20432559-20433439,20433829-20433990,
20434742-20435001,20435110-20435200,20435487-20435675
Length = 595
Score = 32.3 bits (70), Expect = 0.42
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 194 DDNNSVKNVALPRNFG--LSRKWVGPVRYPVTPCKNVAPEAGAASRSDADVT 343
D N V+NVALPRN L R+WV P PV + PE G + D T
Sbjct: 148 DVNYQVQNVALPRNGSDPLLREWVKPGHNPV-----IVPEGGINATQFRDPT 194
>04_04_1270 -
32278793-32279095,32279177-32279327,32279427-32279664,
32279778-32279988,32280067-32280248,32280332-32280448,
32280828-32282094
Length = 822
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 570 QVTFRIIVFSGPTDPSLGSFTLALVPRL 487
QV+ R++ + GP DPS G F+L+ P L
Sbjct: 165 QVSRRLVAWKGPNDPSTGEFSLSGDPSL 192
>08_01_0463 -
4075037-4075316,4075997-4076151,4076818-4078861,
4080757-4081589
Length = 1103
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 287 TESRGISRDRPTFDSARNFAVKQHF*RSYYHRH 189
+E GI+ + P+F R A++ HF R+YY +H
Sbjct: 578 SECDGITVESPSFHVLRVLALENHFSRNYYCKH 610
>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
Length = 817
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 290 KNVAPEAGAASRSDADVTRRHFVYGIGDSD 379
K V +A AAS DAD +RRH V IG D
Sbjct: 338 KTVTLDAAAASPGDADGSRRHIVSFIGGID 367
>04_04_1264 -
32227812-32228114,32228199-32228349,32228454-32228691,
32228786-32228996,32229077-32229270,32229334-32229450,
32229580-32230522
Length = 718
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 570 QVTFRIIVFSGPTDPSLGSFTLALVPR 490
QV R++ + GP DPS G F+ PR
Sbjct: 55 QVAMRLVAWKGPNDPSTGDFSYHSDPR 81
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 570 QVTFRIIVFSGPTDPSLGSFTLA 502
QV RI+ + GP DPS G+F+L+
Sbjct: 2547 QVAQRIVSWKGPDDPSTGNFSLS 2569
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 570 QVTFRIIVFSGPTDPSLGSFTLA 502
QV R I + GP DPS G F+++
Sbjct: 1645 QVAMRCIAWKGPDDPSTGDFSIS 1667
>06_02_0155 + 12380452-12381012
Length = 186
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 257 VGPVRYPVTPCKNVAPEAGAASRSD--ADVTRRHFVYG 364
VGP+ P T K+ P A AA+ +D D +H YG
Sbjct: 133 VGPMAAPATTVKDAPPAAAAAAANDVHGDADEQHPGYG 170
>06_03_1270 -
28867654-28868076,28868394-28868785,28869438-28869588,
28869727-28869906
Length = 381
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 281 TPCKNVAPEAGAASRSDADVTR 346
T C++VAPE G A SD + TR
Sbjct: 72 TRCRDVAPEVGGARCSDLNTTR 93
>04_04_1269 +
32272290-32272321,32272924-32274143,32274390-32274433,
32274883-32275093,32275176-32275413,32275498-32275585,
32275865-32276020,32276370-32276444
Length = 687
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 570 QVTFRIIVFSGPTDPSLGSFTLA 502
QV R I + GP DPS G F+ +
Sbjct: 161 QVAMRFIAWKGPDDPSTGDFSFS 183
>04_02_0004 -
8430902-8431210,8431295-8431445,8431542-8431830,
8431873-8432083,8432184-8432380,8432454-8432555,
8432666-8433998
Length = 863
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 558 RIIVFSGPTDPSLGSFTL 505
RI+ + GP DPS G FT+
Sbjct: 177 RIVAWRGPNDPSAGDFTM 194
>11_01_0384 -
2908789-2908991,2909104-2909464,2909574-2909731,
2909877-2910097,2910909-2911139,2911545-2911582,
2911700-2911804
Length = 438
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 464 KPMYLHNVSICDNKHFSKNNNFIKISDLRQSRQCRRRSAFS*RQRLILKLPQLRGRHSYT 285
KP +H CDN + N+ +KI D + ++R S + + P+L G +Y
Sbjct: 156 KPPIIHRDLKCDNIFINGNHGKVKIGDFGLAMVMQQRKTRSIQGTIEFMAPELFG-ENYN 214
Query: 284 E 282
E
Sbjct: 215 E 215
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +2
Query: 125 DENNKIKKSSLVCLQTA-----PSGPSDDDNNSVKNVALPRNFGLSRKWVGPVRYPVTP- 286
+E +++ +C + S S DD+N+V + L+ ++V P +P TP
Sbjct: 160 EEEEEVRSGPCICTDCSFSPLHESSSSSDDDNAVPSPTFSLFLALAEQFV-PFTHPKTPT 218
Query: 287 CKNVAPEAGAASR 325
+VA +AG R
Sbjct: 219 ATDVALQAGEGKR 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,997,115
Number of Sequences: 37544
Number of extensions: 372735
Number of successful extensions: 907
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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