Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c19
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39243| Best HMM Match : HTH_7 (HMM E-Value=0.035)                   31   1.3  
SB_19272| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_30207| Best HMM Match : DUF190 (HMM E-Value=7.7)                    30   2.3  
SB_19078| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_39243| Best HMM Match : HTH_7 (HMM E-Value=0.035)
          Length = 694

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 167 QTAPSGPSDDDNNSVKNVALPRNFGLSRKWVGPVRYPVTP 286
           QTAP  P D DN++   V  P N  L+ +++  +R+P  P
Sbjct: 628 QTAP--PPDPDNDTTGVVVPPVNLDLNDEYIAALRHPFDP 665


>SB_19272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 104 INFDRYLDENNKIKKSSLVCLQTAPSGPSDDDNNSVKNVALPRNFGLSRKWVGPVRYPVT 283
           IN  ++ ++ N++KKS L C +T       ++ N      LP  +G +R     V+ P +
Sbjct: 2   INVVQHKEKKNELKKSPLACDRT-----RSEEQNGNHTYGLPNRYGSTRLLRKAVKNPKS 56

Query: 284 PCKNVA 301
           P  +++
Sbjct: 57  PSTDIS 62


>SB_30207| Best HMM Match : DUF190 (HMM E-Value=7.7)
          Length = 142

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -1

Query: 288 HGVTGYLTGPTHFRLSPKFRGKATFLTELLSSSLGPLGAVCKQTR 154
           H V G +   T  R    FRG  +   ELLS+ LG    VCK  R
Sbjct: 43  HQVKGLVLSRTSPRAIAVFRGVLSQTHELLSTELGNFRIVCKYRR 87


>SB_19078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 128 ENNKIKKSSLVCLQTAPSGPSDDDNNSVKNVALPRNFGLSRKWVGPVRYPVTPCKNVA 301
           + N++KKS+L C +T     S++ N +  N  LP  +G +R     V+ P  P  +++
Sbjct: 9   KKNELKKSTLACDRTR----SEEQNGNHTN-GLPNRYGSTRLLRKAVKNPKAPSTDIS 61


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 149 SSLVCLQTAPSGPSDDDNNSVKNVALPRNFGLSRKWVGPVRYPVT--PCKNVA 301
           ++L    T+PSG +  +NNS  N   P   G     V PV  PV   PC   A
Sbjct: 277 NNLTSNNTSPSGGNTTNNNSTNNNTSPGGGGGGGGAVTPVGCPVNTRPCNLTA 329


>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 194 DDNNSVKNVALPRNFGLSRKWVGPVRYPVTPCKNVAPEAGAASRSDADVT 343
           D+ NS K + L R   L    +     P+ P  N+A   GA      D+T
Sbjct: 584 DETNSTKTILLSREAELIDTTIDFESVPIPPTNNIASLTGAHLNQLIDIT 633


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,375,976
Number of Sequences: 59808
Number of extensions: 445507
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)