Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c19
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    25   1.00 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.3  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 92  IPKEINFDRYLDENNKIKKSSLVCL 166
           + KE +F+RYL    +I+ +  +CL
Sbjct: 23  LEKEFHFNRYLTRRRRIEIAHALCL 47


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 92  IPKEINFDRYLDENNKIKKSSLVCL 166
           + KE +++RYL    +I+ +  +CL
Sbjct: 23  LEKEFHYNRYLTRRRRIEIAHALCL 47


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 56  PKHSCATYRTYF 21
           PKH+CA YR  F
Sbjct: 252 PKHACAEYRRNF 263


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 92  IPKEINFDRYLDENNKIKKSSLVCL 166
           + KE +++RYL    +I+ +  +CL
Sbjct: 285 LEKEFHYNRYLTRRRRIEIAHALCL 309


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 482 LCKYVYKPMYLH 447
           LC+Y+YK + LH
Sbjct: 327 LCEYLYKQLELH 338


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 387 RYFYKVVIFAKMFIITYTYVM 449
           R+F  ++ +   FI+ +TY++
Sbjct: 402 RHFAAIIEWLSFFIVIFTYII 422


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 422 HFSKNNNFIKISDLRQSR 369
           +FSKNN  + IS L   R
Sbjct: 508 NFSKNNTIVDISKLVNKR 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,929
Number of Sequences: 438
Number of extensions: 4447
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)