Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c19
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-l...    31   1.1  
At3g18500.1 68416.m02351 nocturnin-related contains weak similar...    30   1.9  
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-...    29   4.3  
At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph...    28   5.7  
At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph...    28   5.7  
At1g63260.2 68414.m07151 senescence-associated family protein si...    28   7.6  
At1g16140.1 68414.m01934 wall-associated kinase, putative contai...    28   7.6  
At1g11300.1 68414.m01298 S-locus lectin protein kinase family pr...    27   10.0 

>At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-like
           protein [Arabidopsis thaliana] GI:12006422; contains
           Pfam profiles: PF02197 Regulatory subunit of type II PKA
           R-subunit, PF02735: Ku70/Ku80 beta-barrel domain,
           PF03731: Ku70/Ku80 N-terminal alpha/beta domain,
           PF03730: Ku70/Ku80 C-terminal arm
          Length = 680

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 128 ENNKIKKSSLVCLQTAPSGPSDDDNNSV 211
           EN K+KK+S   L+  PSG  D+DN  +
Sbjct: 515 ENPKLKKASKRLLRDKPSGSDDEDNRMI 542


>At3g18500.1 68416.m02351 nocturnin-related contains weak similarity
           to Nocturnin (CCR4 protein homolog) (Swiss-Prot:O35710)
           [Mus musculus]
          Length = 262

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 146 KSSLVCLQTAPSGPSDDDNNSVKNVALPRNFGLSRKWVGPV 268
           +SS VC  ++ SGPSD +  S  N    R++  SR+W  P+
Sbjct: 42  RSSFVCCSSSTSGPSDSNPESSSN----RSY--SRRWQNPL 76


>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
            DNA-repair protein, putative identical to UV
            hypersensitive protein [Arabidopsis thaliana]
            gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
            DNA-repair protein complementing XP-G cells homolog
            (Xeroderma pigmentosum group G complementing protein
            homolog) [Xenopus laevis]
          Length = 1479

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 134  NKIKK--SSLVCLQTAPSGPSDDDNNSVKNVALPRNFGLSRKWVGPVRYP 277
            +K+KK  S+ V  +   SG S DD   +K + + ++  +S+ W  P+ +P
Sbjct: 1068 SKVKKRGSASVDNKGIISGASTDDTEEIKQIFMDQHRKVSKNWHIPLTFP 1117


>At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase, putative / GcpE family protein
           similar to GcpE [Plasmodium falciparum] GI:13094969;
           contains Pfam profile PF04551: GcpE protein; supporting
           cDNA gi|27462471|gb|AF434673.1
          Length = 740

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 461 PMYLHNVSICDNK-HFSKNNNFIKISDLRQSRQCRRR 354
           P  +  + I D+K  F K+ N ++I D+R  R  RRR
Sbjct: 7   PAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRR 43


>At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase, putative / GcpE family protein
           similar to GcpE [Plasmodium falciparum] GI:13094969;
           contains Pfam profile PF04551: GcpE protein; supporting
           cDNA gi|27462471|gb|AF434673.1
          Length = 741

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 461 PMYLHNVSICDNK-HFSKNNNFIKISDLRQSRQCRRR 354
           P  +  + I D+K  F K+ N ++I D+R  R  RRR
Sbjct: 7   PAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRR 43


>At1g63260.2 68414.m07151 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 258

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = -2

Query: 101 LSVYSSSKVFFLVCCPKHSCATYRT 27
           +++++ S V+F+ CC + + A+YR+
Sbjct: 232 VAIFNVSMVYFVGCCARRNAASYRS 256


>At1g16140.1 68414.m01934 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 690

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +2

Query: 170 TAP-SGPSDDDNNSVKNVALPRNFGLSRKWVGPVRYPVTP--CKNVAPEAGAASRSDADV 340
           TAP  GP+   N  V N++LP++   S   V  ++ PVT   C +   +    +  D ++
Sbjct: 48  TAPLPGPAKLINREVVNISLPKSDFFSPYGVVHIKGPVTSLGCSSNISQGLQKTLPDLNI 107

Query: 341 TRRHFVYGIGDSDEDQIFL*SC 406
           T R   Y +  +DE+++    C
Sbjct: 108 TGRGSPYFL--TDENRLVAVGC 127


>At1g11300.1 68414.m01298 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 1635

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 582 GGSIQVTFRIIVFSGPTDPSLGSFTLALVPRLY 484
           GG++ +T     +  P+DPS GS+T ALV   Y
Sbjct: 171 GGNVTITS----WKSPSDPSPGSYTAALVLAAY 199



 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 582  GGSIQVTFRIIVFSGPTDPSLGSFTLALV 496
            GG+I +T     ++ P+DPS GS+T ALV
Sbjct: 986  GGNITITS----WTNPSDPSPGSYTAALV 1010


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,210
Number of Sequences: 28952
Number of extensions: 315057
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)