Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c18
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134...    29   2.7  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    29   2.7  
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565...    29   3.5  
08_02_1092 + 24267737-24268641,24269005-24269884                       29   4.7  
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558...    28   6.2  
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856     28   8.2  

>06_03_1368 -
           29612463-29612638,29613135-29613222,29613334-29613474,
           29613561-29613595,29613990-29614054,29614286-29614335,
           29614417-29614521,29614608-29614688,29614771-29614852,
           29614941-29614995,29615111-29616164,29617202-29617289,
           29617379-29617485,29617568-29617686,29617784-29617994
          Length = 818

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 434 INGTTNSKPNIVKIEVALTQDIIRATELESFGLQN 330
           +  TTN+ PNI ++ +  +Q ++ + ELE  G +N
Sbjct: 332 LQDTTNAAPNINEVGMEESQQVLTSNELEDDGKRN 366


>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
            6627009-6627116,6627194-6627328,6627429-6627528,
            6627763-6627974,6628060-6628125,6628231-6628464,
            6628583-6628641,6628716-6628782,6628863-6629192,
            6629267-6629335,6629417-6629503,6629605-6629692,
            6630057-6630178,6630251-6630355,6630442-6630485,
            6630558-6630627,6630711-6630814,6630980-6631189,
            6632935-6633018,6633291-6634003,6634115-6634649,
            6634703-6634789,6634826-6634970,6635049-6635125,
            6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 145  SSGKYTGPRYRMICGCVLGFVT-ATILFVCLPLCNSKLNK 261
            S+G   GP   +I G V+GF T A +L +   +C SK  K
Sbjct: 1246 SNGNRPGPEAAIIAGMVIGFFTFALLLAIVACVCCSKKKK 1285


>03_05_1149 +
           30753463-30754695,30754834-30755017,30755321-30756549,
           30756702-30756816,30757126-30758084
          Length = 1239

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 8/36 (22%), Positives = 24/36 (66%)
 Frame = -1

Query: 229 RRTESLL*RNPKRIHKSCDILVQYIYHWTMNDNKSI 122
           R T   + +   ++++ C+ L++Y+++W + ++KS+
Sbjct: 660 RNTTKTVLQQAPQVYEVCNDLIRYLHNWRLKNDKSV 695


>08_02_1092 + 24267737-24268641,24269005-24269884
          Length = 594

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 256 NKLSCTCNPNPICSECGEIF*GASQFCKPKLSSSVALIMSCVSATSILT 402
           N L  TC    +         G S  C+P  SS+V+   SC S +S  T
Sbjct: 123 NGLRKTCGSGKVSDTADSTESGKSSMCRPSTSSNVSDESSCSSLSSSTT 171


>04_04_0483 -
           25554531-25554605,25554681-25555644,25555722-25555847,
           25556162-25556331,25556431-25556526
          Length = 476

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 269 HESLFNLELHKGKQTNRIVAVTKPKT 192
           HESLF+L+++K +Q +  V+   PK+
Sbjct: 247 HESLFSLQMYKDQQNDNEVSSPAPKS 272


>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
          Length = 1002

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 76  DNLVIGIIFRYLKICGSIYYHS*SSGKYTGPRYRMIC-GCVLGF-VTATILFVCLPLCNS 249
           +NL+ G+I R L  C ++ + + SS K +G     +C  C+  F V+   L   +P C +
Sbjct: 336 ENLLSGVIPRELGQCSNLKFLNLSSNKLSGSIDNGLCPHCIAVFDVSRNELSGTIPACAN 395

Query: 250 K 252
           K
Sbjct: 396 K 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,540,421
Number of Sequences: 37544
Number of extensions: 381786
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)