Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c18
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine re...    29   2.4  
AF000195-6|AAO61435.1|  350|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    27   9.8  
AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.      27   9.8  
AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    27   9.8  

>AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein3 protein.
          Length = 310

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +1

Query: 346 LSSSVALIMS-CVSATSIL-TIFGLLLVVPFICEKYIRPMLQEE 471
           +SS+VA+I   C+S   ++  + GL   + F+C  YI+P L+ +
Sbjct: 1   MSSTVAMINQICISTEIVVFNVLGLFGNINFLCLTYIKPALRSK 44


>AF000195-6|AAO61435.1|  350|Caenorhabditis elegans Hypothetical
           protein C32F10.8b protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 425 TTNSKPNIVKIEVALTQDI-IRATELE 348
           T+N  PN++K+E A+   I IRA ELE
Sbjct: 31  TSNINPNVIKMEYAVRGPIVIRAVELE 57


>AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical
           protein C32F10.8a protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 425 TTNSKPNIVKIEVALTQDI-IRATELE 348
           T+N  PN++K+E A+   I IRA ELE
Sbjct: 31  TSNINPNVIKMEYAVRGPIVIRAVELE 57


>Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical
           protein C04F12.3 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -2

Query: 204 ETQNASTNHAISWSSIFTTGL*MIINRSTYLQIPKDNPDNKIILATFHSNFPLIFILLEN 25
           E +  +  HAI  +   T  L  ++ R +   I  ++ +  + LA  + N+P+I +LL+N
Sbjct: 315 EKKRNALMHAIEMNDFETIQL--LVERGSGTNIEDESGETALSLAVKNVNYPVIGLLLDN 372


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
           protease protein39 protein.
          Length = 951

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 229 CLPLCNSKLNKLSCTCNPNPICSE 300
           C   C ++L    CTCNP  I +E
Sbjct: 659 CEHTCQNRLGSYVCTCNPGYILAE 682


>AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -2

Query: 204 ETQNASTNHAISWSSIFTTGL*MIINRSTYLQIPKDNPDNKIILATFHSNFPLIFILLEN 25
           E +  +  HAI  +   T  L  ++ R +   I  ++ +  + LA  + N+P+I +LL+N
Sbjct: 315 EKKRNALMHAIEMNDFETIQL--LVERGSGTNIEDESGETALSLAVKNVNYPVIGLLLDN 372


>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 64  ECCQDNLVIGIIFRYLKICGSIYYHS*SSGKYTGPRYRMICGCVLGFVTATIL--FVCLP 237
           E C  + +  +IF  +  C SI+  +   G +   R    C   L FVT T L  +    
Sbjct: 406 EGCAFDFLKCLIFYQVLFCLSIHCRTQFEGLFQKFRIGRHCTSYLSFVTITALMGYAVCN 465

Query: 238 LCNSKLNKLSCTCNP 282
           L    + +LS TC+P
Sbjct: 466 LLVLLVEQLSETCSP 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,003,720
Number of Sequences: 27780
Number of extensions: 384072
Number of successful extensions: 905
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)