Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c16
         (191 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   7.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   7.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   7.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   7.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    18   9.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 189 FFLSLISSVFLN 154
           FFL LISS+ L+
Sbjct: 169 FFLDLISSIPLD 180


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 189 FFLSLISSVFLN 154
           FFL LISS+ L+
Sbjct: 169 FFLDLISSIPLD 180


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 189 FFLSLISSVFLN 154
           FFL LISS+ L+
Sbjct: 169 FFLDLISSIPLD 180


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 152 NWLQNTY 132
           NW QNT+
Sbjct: 532 NWFQNTF 538


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 50  SRGRPAYFVF 21
           SR  P YF+F
Sbjct: 549 SRDEPKYFIF 558


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 38  VGL*ICNIKKDFYTLVFVWNS 100
           V L IC+      T +F++NS
Sbjct: 88  VNLAICDFFMMIKTPIFIYNS 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,707
Number of Sequences: 438
Number of extensions: 484
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)