Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c15
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    31   0.20 
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    27   3.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.2  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   9.9  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   9.9  

>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 24  NYKFCHNFYCFYITYFYSFTHLNRFPVILLMSKVKKNDIDQESTKG 161
           +Y F +  + F++T + SFT ++   +   + +   ND+D ES  G
Sbjct: 470 HYVFVNTCHNFFLTLYQSFTEVDENSIFNGVFETLNNDVDDESVIG 515


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 162 ITRYA-LSDRSFIDKGWTLLPIEKVVR 239
           IT++  L DRS + K + +LPIE +VR
Sbjct: 90  ITKHEELKDRSMLVKKYKILPIEAIVR 116


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 252  YRMRPA--HPEFNWFERNKNKGIKHYDS 329
            Y ++P    P  +WF R K+ G KH D+
Sbjct: 1193 YSIKPVSNRPYRSWFSRKKDSGQKHLDN 1220


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 462 RRCYIPQIAAARCSLQRRNNQAQVDHF 382
           RRC     +     L+RR NQ+Q  HF
Sbjct: 270 RRCESATSSRQGFGLERRTNQSQFQHF 296


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 426 CSLQRRNNQAQVDHFCK 376
           C+LQR  ++A  D FC+
Sbjct: 34  CTLQRHGSRASADEFCE 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,740
Number of Sequences: 5004
Number of extensions: 58016
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)