Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c15
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    29   4.4  
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886...    28   5.9  
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409...    28   7.7  

>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = +3

Query: 396 ALDYYDAEESNAQQRFVVYSSGEKNENGRSHPTTVLATFDYLGNGIVFD---HSGKIRLK 566
           A+DY  A+  +  +R  V    E + +G SHP  +  T D L   +V +    S  + L 
Sbjct: 312 AIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIY-TQDDLPKQVVRNLNQGSNVMSLD 370

Query: 567 YNQTEGVIL--DTKLGPVSHWK 626
           ++  +  IL   T +G +  W+
Sbjct: 371 FHPVQQTILLVGTNVGDIGIWE 392


>05_03_0142 -
           8866316-8866608,8867652-8867886,8868801-8869076,
           8869166-8869292,8869869-8870116,8870189-8871104,
           8871980-8872086,8872562-8872930
          Length = 856

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 654 KPADHSKCAISNEKL--VLILCPV*RLQ-FDCI*VEFYHCDQILYHYPNNQTLLKR 496
           K  DH    +   K+  +LILCP   ++ ++    E+  C   +YH PN   +L++
Sbjct: 177 KDNDHGDQLVEGRKIAPILILCPTSVIRNWENEFAEWARCSVAVYHGPNRDLVLQK 232


>07_03_1003 +
           23239829-23240121,23240257-23240349,23240785-23240993,
           23241585-23241729,23241809-23241881,23242165-23242311,
           23242411-23242536,23242653-23242712
          Length = 381

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 324 RNVLCLYSCYVQTS*IQDELVAYDIRSSCEP 232
           +N+LC   CY  TS + DELV + ++   +P
Sbjct: 266 KNILC--QCYHDTSAVTDELVQFILQPGLDP 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,703
Number of Sequences: 37544
Number of extensions: 329794
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)