Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28c15
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 29 3.9
Z81560-3|CAB04548.2| 328|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z72502-9|CAE17688.1| 300|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 27 9.1
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 27 9.1
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 9.1
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 27 9.1
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 27 9.1
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 27 9.1
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 471 ENGRSHPTTVLATFDYLGNGIVFDHSGKIRLKYNQTEGVILDTKL-GPVSHWK 626
E+G +P LA ++ + ++ DH RL+YN VI T L G + WK
Sbjct: 266 EDGVENPIQ-LADYNLIKVALLGDHRKAWRLRYNLMGSVISSTSLDGTLRSWK 317
>Z81560-3|CAB04548.2| 328|Caenorhabditis elegans Hypothetical
protein K02E2.3 protein.
Length = 328
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 320 MFYAFILVTFKPVKFRMSWSHTIYVHLANHFFN 222
+F AFI+VT P K R + S + +H FF+
Sbjct: 31 LFGAFIIVTRTPEKMRSAKSSMLQLHCVGAFFD 63
>Z72502-9|CAE17688.1| 300|Caenorhabditis elegans Hypothetical
protein C08B6.12 protein.
Length = 300
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 368 TTSIIIEFC*FFSRVVMFYAFILVTFKPVKFRMSWSHTIYV 246
T +I++EF FF++ FY+F +V F + +M++ ++
Sbjct: 52 TQNILVEFPYFFTQDPAFYSFEIVKFVEIFSQMAYQSKFFM 92
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 102 VILLMSKVKKNDIDQESTKGITRYALSDRSFIDKGWTLLPIEKVVRKMNVYRMRPAHPEF 281
V + MS+ + DI T G + + R + L+ VR +V P H
Sbjct: 196 VNMWMSQGEYRDIPHHRTGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDVEGWTPLHAAA 255
Query: 282 NWFERNKNKGIKHYDSGEKLAEFDDNG 362
+W ER+ K + ++G +L++ G
Sbjct: 256 HWAERDACKIL--LENGAELSDLTFTG 280
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Frame = +3
Query: 252 YRMRPAHPEFN-WFERNKNKGIK---HYDSGEKLAEFDDNGRGRWFYRNGQLALDYYDAE 419
Y R + N W R G + +Y NGR R RNG Y +
Sbjct: 449 YESRSSFSNSNEWRSRGGGNGGRFQNNYSENNGRQSNGSNGRWRGNNRNGATTNGYGYQQ 508
Query: 420 ESNAQQRFVVYSSGEKNENGRS 485
+N Q Y +G++ ENG +
Sbjct: 509 HNNRQNH---YQNGQQRENGEN 527
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Frame = +3
Query: 252 YRMRPAHPEFN-WFERNKNKGIK---HYDSGEKLAEFDDNGRGRWFYRNGQLALDYYDAE 419
Y R + N W R G + +Y NGR R RNG Y +
Sbjct: 351 YESRSSFSNSNEWRSRGGGNGGRFQNNYSENNGRQSNGSNGRWRGNNRNGATTNGYGYQQ 410
Query: 420 ESNAQQRFVVYSSGEKNENGRS 485
+N Q Y +G++ ENG +
Sbjct: 411 HNNRQNH---YQNGQQRENGEN 429
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,066
Number of Sequences: 27780
Number of extensions: 321125
Number of successful extensions: 860
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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