Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c08
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   2.6  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   2.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   4.5  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.5  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   5.9  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   7.9  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   7.9  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   7.9  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   7.9  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 298 QIISLRALESVLTQSPNINETRKLKSTTNISVNTRKNSSNHENLNFITN*N 450
           Q I+  ++    + +P   +T    +T+ + V+T KNS+  ENLN I   N
Sbjct: 492 QTITESSVAKTKSTTPKSTDTPTEATTSPVKVST-KNSNTTENLNGINESN 541


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 215 NSFFYIKITNRAYSGQYVFFSHKEQQHSE 129
           +SF   KI+ R  SG+ ++F  K+ +HS+
Sbjct: 253 SSFSGPKISARTSSGKIIYFPKKKNRHSD 281


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 252 SDDDTVSSISPMSYSANN 305
           SDDDT+SS++ M Y  N+
Sbjct: 23  SDDDTMSSLTRMIYDKNS 40


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 199 LK*LTGHTPASTYFSRTKN-NNIVNTTATAWSSLIFNMKT*SCFEFYCYFVY 47
           L+  TG+T   T   R ++  N +   AT   SLIF      CF  Y   VY
Sbjct: 299 LRKTTGNTAYYTIHERERDPKNAMIQAATQAVSLIFTEPIVVCFTLYLTVVY 350


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 154 RTKNNNIVNTTATAWSSLIFN 92
           +T N    NTT  AWS ++ N
Sbjct: 149 QTSNPRFANTTREAWSKIVTN 169


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 337 QSPNINETRKLKSTTNISVNTRKNSSNHENLN 432
           ++PNI+    L  +T+  +NT +N S   N++
Sbjct: 155 ENPNISVLETLPDSTSYLINTSQNYSLRNNVS 186


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 273 SISPMSYSANNFIARARVSTH--SKPKYKRDPEIE 371
           S+SPM+ +A++ +  + V TH  S P   R P ++
Sbjct: 301 SLSPMASTASSSVTNSPVDTHTPSTPIMSRPPSMK 335


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 239 IDATVFYLNSFFYIKITNRAYSGQYVFFSHKEQQHSEHNSYCVEQP 102
           ID   +Y  SF Y+       SG  +    K      +NS CVE+P
Sbjct: 269 IDFFYYYGFSFNYLDSVVSVRSGTVLNKQEKGWAMEVNNSLCVEEP 314


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +1

Query: 316 ALESVLTQSPNINETRKLKSTTNISVNTRKNSSNHENLNFITN 444
           A++  LT++  I ET+       + ++  KN++  +N+  + N
Sbjct: 470 AVKQALTETHVIQETKNFFEEHGVDLDAFKNAARSDNVLLVKN 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,130
Number of Sequences: 5004
Number of extensions: 34804
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)