Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c08
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579...    29   1.5  
09_06_0261 - 21919017-21920594                                         28   3.4  
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793...    28   3.4  
02_04_0300 + 21784634-21784691,21784784-21784893,21787486-217877...    28   4.5  
12_01_0079 + 644754-645932,645966-646061,646193-647122                 27   7.8  
11_01_0078 + 609005-610183,610217-610312,610444-611373                 27   7.8  
09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895...    27   7.8  

>11_01_0705 -
           5795976-5796051,5796450-5796518,5796632-5796780,
           5796875-5797006,5797128-5797450,5798166-5798172,
           5799126-5799180,5799685-5799740,5799862-5800029,
           5800912-5801097,5801269-5801419,5801515-5801743,
           5802277-5802532,5802793-5802894
          Length = 652

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 283 RCRILQIIS-LRALESVLTQSPNINETRKLKSTTNISVNTRKNSSNHENLN 432
           R  IL+II+ +   E ++ + P  +   KL S  N S+N     ++H NLN
Sbjct: 289 RPNILEIINQINEKEDIIGELPIDHALEKLPSYNNESINLESKLASHLNLN 339


>09_06_0261 - 21919017-21920594
          Length = 525

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 65  KFKAALCFHIKDEAAPRSSCCVHYVVVLCAR 157
           +   A+CF + D    RS+ C H+  V C R
Sbjct: 130 RLTCAICFDVFDTGGMRSAGCSHFYCVSCWR 160


>06_02_0251 -
           13478902-13478952,13478989-13479055,13479168-13479379,
           13480144-13481540,13481574-13482432,13482537-13482836
          Length = 961

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +3

Query: 183 PVSYFNIKKRIQVKNRRIDIEPCSDDDTVSSISPMSYSANNFIARARVSTHSKPKYKRDP 362
           P S     K+I + N++ +I   S ++T +S    S   N+  + + V    +    +  
Sbjct: 635 PSSSIRDHKQIVLANQKNNIISRSHNETQASSEIDSIGTNDNASTSSVYDLPEESIHQSA 694

Query: 363 EIEVDNEYIGEHPQEFI*SRKLKFY 437
           +   +N    E P+E I  RK+K +
Sbjct: 695 KNSTENTSYNEEPEESIIKRKIKLH 719


>02_04_0300 +
           21784634-21784691,21784784-21784893,21787486-21787771,
           21788292-21788472,21788978-21789195,21789511-21789631,
           21789703-21789800,21789894-21790105,21790199-21790311,
           21790404-21790499,21790626-21790841,21790958-21791099,
           21791280-21791525,21792078-21792389
          Length = 802

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 276 YWKLCRHLNMVLYRCDGF 223
           +WK+C+ L++  Y+ DGF
Sbjct: 762 FWKMCKILHLFYYQTDGF 779


>12_01_0079 + 644754-645932,645966-646061,646193-647122
          Length = 734

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 243 EPCSDDDTVSSISPMSYSANNF 308
           +PC D D ++ + P+S S +NF
Sbjct: 542 DPCYDPDAIALLGPVSESLDNF 563


>11_01_0078 + 609005-610183,610217-610312,610444-611373
          Length = 734

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 243 EPCSDDDTVSSISPMSYSANNF 308
           +PC D D ++ + P+S S +NF
Sbjct: 542 DPCYDPDAIALLGPVSESLDNF 563


>09_04_0746 -
           19888479-19888622,19888739-19888867,19889061-19889548,
           19889666-19889843,19889920-19889991,19890993-19891193
          Length = 403

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 255 DDDTVSSISPMSYSAN-NFIARARVSTHSKPKYKRDPEIEVDNEYIGE 395
           D D+     P++ +AN  F+AR  ++  S P  +  PE E + +   E
Sbjct: 149 DQDSDMQSDPIALTANFTFVARDSMTGKSAPVNRLSPETEKEKQLFAE 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,178,882
Number of Sequences: 37544
Number of extensions: 181954
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)