Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c08
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical ...    32   0.24 
Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   3.0  
Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin ...    28   4.0  
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    27   9.2  

>AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.10 protein.
          Length = 337

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = +1

Query: 289 RILQIISLRALESVLTQSPNINETRKLKSTTNISVNTRKNSSNHENLNFITN*NNIVRKP 468
           +IL +   +AL+ VL  + N + T+  +ST+++S+N  +    HE +N   N NN   KP
Sbjct: 154 QILALDDRKALQEVLMLT-NGSNTQLPQSTSSLSINHIQQQKQHEPIN---NNNNTEMKP 209

Query: 469 XK 474
            K
Sbjct: 210 KK 211


>Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical
           protein F28C6.2 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 252 SDDDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDNEYIGEHPQ 404
           S++D +    P    +N +    +++ + K   K+  E+E +    GEH Q
Sbjct: 442 SNEDVIPGQKPFERMSNEYFVEWQMNLYKKKLAKQMEEVEENKSQRGEHQQ 492


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 42  LL*TK*Q*NSKQLYVFILKMRLLHAVAVVFTMLLFFVREKYVLAGVCPVSYFNIKKR 212
           LL TK     K  Y+FIL  + LH + V + +    V +   +  +  +SY    KR
Sbjct: 225 LLQTKVTLLMKSTYIFILLFQFLHDLDVGYALFFMVVLDMIAIPLINSISYIVCNKR 281


>Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical
           protein C23H4.3 protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 190 LTGHTPASTYFSRTKNNNIVNTTATAWSSLIFN 92
           LT  T   T   +  N+N V TTA+A SSL+ N
Sbjct: 558 LTKTTKGFTSIHQDNNSNTVTTTASAQSSLLKN 590


>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
           protein T24A11.1b protein.
          Length = 1006

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 230 TVFYLNSFFYIKITNRAYS---GQYVFFSHKEQQHS 132
           T+F     + IK+   AYS   G ++F SHKE++ +
Sbjct: 543 TLFQFTHAYLIKLAKHAYSGLFGSFLFNSHKERREA 578


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 230 TVFYLNSFFYIKITNRAYS---GQYVFFSHKEQQHS 132
           T+F     + IK+   AYS   G ++F SHKE++ +
Sbjct: 539 TLFQFTHAYLIKLAKHAYSGLFGSFLFNSHKERREA 574


>AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin
           homologous protein 1 protein.
          Length = 930

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 230 TVFYLNSFFYIKITNRAYS---GQYVFFSHKEQQHS 132
           T+F     + IK+   AYS   G ++F SHKE++ +
Sbjct: 543 TLFQFTHAYLIKLAKHAYSGLFGSFLFNSHKERREA 578


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 72  KQLYVFILKMRLLHAVAVVFTMLLFFVREKYVLAGVCPVSYFNIKKRI 215
           K + +FI+ M   +   V+ T L+F +    V+A   PVSY+N + +I
Sbjct: 78  KNMMLFIIIM--CNIFGVIRTTLIFSIAFLRVIAICFPVSYYNNRSKI 123


>Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical
           protein B0379.4b protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 255 DDDTVSSISPM-SYSANNFIARARVSTHSKPKYKR 356
           DDDT S+  P+ S+SAN  I + R +   KP++ R
Sbjct: 172 DDDTAST--PLNSFSANASIEKKRSTARRKPRWAR 204


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = +3

Query: 111 HAVAVVFTMLLFFVREKYVLAG-----VCPVSYFNIKKRIQVKNRRIDIE 245
           H V ++FT  L++VR  +V+       +C  S+ ++K +   K + +++E
Sbjct: 53  HGVNMIFTTSLYWVRFLWVVVSLVCICLCMYSFSHVKDKYDRKEKIVNVE 102


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = +3

Query: 111 HAVAVVFTMLLFFVREKYVLAG-----VCPVSYFNIKKRIQVKNRRIDIE 245
           H V ++FT  L++VR  +V+       +C  S+ ++K +   K + +++E
Sbjct: 53  HGVNMIFTTSLYWVRFLWVVVSLVCICLCMYSFSHVKDKYDRKEKIVNVE 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,628,408
Number of Sequences: 27780
Number of extensions: 190961
Number of successful extensions: 632
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)