Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c07
         (577 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9GPN0 Cluster: Notch-like transmembrane receptor; n=7;...    36   0.68 
UniRef50_Q70B14 Cluster: Putative RCC1 repeats protein; n=1; Act...    33   4.8  

>UniRef50_Q9GPN0 Cluster: Notch-like transmembrane receptor; n=7;
            Caenorhabditis briggsae|Rep: Notch-like transmembrane
            receptor - Caenorhabditis briggsae
          Length = 1270

 Score = 35.9 bits (79), Expect = 0.68
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 144  VPQPEPRMRICKGYPSDNTASAANKKIEVMLNG--LTALKEQYSHLS 10
            VPQP+PR R+CK   S NT        +V  NG   T + ++ +HL+
Sbjct: 1149 VPQPDPRSRVCKNRESANTKGGRQTMKKVKRNGSKKTPMIQETNHLT 1195


>UniRef50_Q70B14 Cluster: Putative RCC1 repeats protein; n=1;
           Actinoplanes teichomyceticus|Rep: Putative RCC1 repeats
           protein - Actinoplanes teichomyceticus
          Length = 376

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 172 CGRRRQG*CWCERFSSECESGCTVFTY--TVYLIGNSQCW-TLTASYLFT 312
           CG R  G  WC   SS  + G  + +Y  T   +G +  W T+TA Y FT
Sbjct: 190 CGTRTDGTLWCWGDSSAGQLGLGILSYRTTPGQVGTATNWATVTAGYTFT 239


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,631,412
Number of Sequences: 1657284
Number of extensions: 8702203
Number of successful extensions: 14353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14352
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)