Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c07
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   1.5  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   2.6  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   4.5  
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    25   6.0  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.9  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   7.9  

>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 141 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 16
           PQ EP     + Y   N   A  N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = +1

Query: 226 ESGCTVFTYTVYLIGNSQCWTLTASYLFT*SQAHAVYVCTVLAIT*GTFDL*TFTSPSVF 405
           ESG  +     +LI N  C     S+L    QA   Y+C  L    G F L      +V 
Sbjct: 122 ESGFCLPDQVYHLIDNHSCIQTAVSHLLRNHQALFKYLCDYLRS--GEFPL------TVL 173

Query: 406 ILKEILVNYYPR 441
           I   +L  YYP+
Sbjct: 174 IHHVMLYQYYPK 185


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 91  YCVRC*QKNRSDAKWSNRS 35
           YC+RC   ++ D+ W++RS
Sbjct: 539 YCLRCVYDDKMDSLWNSRS 557


>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 4   YLGQVAILLFKSG 42
           YLG VA LLFKSG
Sbjct: 73  YLGTVAFLLFKSG 85


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 249  LHCLFNRKFTMLDINCVLPLHLVPGA 326
            L C+     TML++  V+P+ +VP A
Sbjct: 982  LLCVMAILITMLNVTLVMPIFMVPAA 1007


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 102 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQV 4
           P+DN A+     IE +L+G+T  KE+  H+ ++
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKI 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,551
Number of Sequences: 5004
Number of extensions: 38197
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)