Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28c06
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 184 5e-47
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 183 1e-46
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 154 6e-38
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 153 1e-37
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 34 0.13
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 2.7
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 6.3
11_06_0730 - 26728241-26729335,26729998-26730660 28 8.4
03_05_0231 - 22170343-22172004,22172225-22172449 28 8.4
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 184 bits (449), Expect = 5e-47
Identities = 81/171 (47%), Positives = 112/171 (65%), Gaps = 3/171 (1%)
Frame = +2
Query: 203 DAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEV 382
D I+A Y+W+ GTGI+LRSK RT +D +LP W +DGS+T QA ++S+ ++P+
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQA 875
Query: 383 IYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV--EEPWFGFNQEFILTS 556
I+ DPFR GN+ILV+ DTY +P +N R + +V + PWFG QE+ L
Sbjct: 876 IFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQ 935
Query: 557 SD-GRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLN 706
D PLGWPVGG+P P GPYYCA+GSDK RD+ +A Y+ CLYAG+ ++
Sbjct: 936 RDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINIS 986
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 183 bits (445), Expect = 1e-46
Identities = 80/171 (46%), Positives = 112/171 (65%), Gaps = 3/171 (1%)
Frame = +2
Query: 203 DAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEV 382
+ I+A Y+W+ G+G++LRSK RT D LP W +DGS+T QA ++S+ ++P+
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 383 IYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV--EEPWFGFNQEFILTS 556
I+ DPFR+GN+ILV+ D Y +P +N R N I EV EEPW+G QE+ L
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 557 SD-GRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLN 706
D PLGWPVGGFP P GPYYC IG+DK RD++++ Y+ CLYAG+ ++
Sbjct: 137 KDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINIS 187
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 154 bits (374), Expect = 6e-38
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Frame = +2
Query: 245 INLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILV 424
++L+ + T D LP W FDGS+T QA D+S+ + P+ I+ DPFR+G +ILV
Sbjct: 58 LHLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILV 117
Query: 425 LADTYQFNYQPTSSNHRKNCTIICEKGEV--EEPWFGFNQEFILTSSD-GRPLGWPVGGF 595
+ D Y N +P +N+R N I +V EEPW+G QE+ L PLGWP+GG+
Sbjct: 118 MCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGY 177
Query: 596 PAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLN 706
P P GPYYCA G+DK RD+++A Y+ CL+AG+ ++
Sbjct: 178 PGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINIS 214
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 153 bits (372), Expect = 1e-37
Identities = 71/170 (41%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Frame = +2
Query: 203 DAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEV 382
D I+A Y+W+ G+GI+LRSK RT D LP W +DGS+T QA ++S+ ++P+
Sbjct: 17 DKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 383 IYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV--EEPWFGFNQEFILTS 556
I+ DPFRRG++ILV+ D Y +P +N R + I +V E PW+G QE+ L
Sbjct: 77 IFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQ 136
Query: 557 SDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLN 706
D + WP+G PGPYYCA G++K RD+++A Y+ C+YAG+ ++
Sbjct: 137 KD---VNWPLGW----PGPYYCAAGAEKAFGRDIVDAHYKACIYAGINIS 179
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 149 IALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIW 313
+AL+ + R+ LE P I AS + L +L + + FD P +H+DLP+W
Sbjct: 118 VALHASLFRR--GLESPDRFIRASLLSLYAAAGDLPAARQVFDLSPPNHRDLPLW 170
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 566 RPLGWPVGGFPAPPGPYY 619
RPLG P GGFP P YY
Sbjct: 300 RPLGPPGGGFPVEPFAYY 317
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 176 KYEDLEVPCDAILASYVW 229
K + L+VPCD++ AS+ W
Sbjct: 345 KLDPLQVPCDSVKASFFW 362
>11_06_0730 - 26728241-26729335,26729998-26730660
Length = 585
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 183 KIWRCPAMLFWQVTCGWMVLELTSG 257
++WR P + FWQ T VL T G
Sbjct: 500 QLWRNPDIRFWQTTANLDVLNKTKG 524
>03_05_0231 - 22170343-22172004,22172225-22172449
Length = 628
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 162 KRRCANMKIWRCPAMLFWQ 218
KRRC + WRC A W+
Sbjct: 600 KRRCPKLSSWRCDAQGIWR 618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,053,595
Number of Sequences: 37544
Number of extensions: 455590
Number of successful extensions: 1048
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -