Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28c02
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152...    28   9.0  
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448           28   9.0  

>12_01_1116 +
           11914352-11914415,11915049-11915158,11915254-11915295,
           11916263-11916430,11916506-11916682,11916848-11917051,
           11917125-11917319
          Length = 319

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 287 DMVGRRLRTLAPFVLRGACPQCSVQESRHIRRTLAYIQR 403
           +MV   +  LA F+L   C  C V+ S+H+R T  YI++
Sbjct: 186 EMVTDSIIKLACFLLD--CEYCDVKNSKHLRWTGEYIEK 222


>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
          Length = 850

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 296 GRRLRTLAPFVLRGACPQCS---VQESRHIRRTLAYIQRNYPWE 418
           G  L +LAP + R A P C+   V  S  I +++  ++ +YPW+
Sbjct: 93  GETLASLAP-LRRLALPACAHRRVPPSSSIAKSILQLEHDYPWD 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,897
Number of Sequences: 37544
Number of extensions: 389079
Number of successful extensions: 815
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)