Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28b22
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 179 3e-46
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 134 7e-33
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 134 1e-32
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 131 7e-32
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 114 1e-26
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 111 8e-26
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 110 2e-25
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 103 2e-23
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 81 9e-17
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 79 7e-16
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 75 1e-14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 72 8e-14
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 68 1e-12
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 67 2e-12
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 66 5e-12
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 65 7e-12
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 60 2e-10
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 53 3e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 46 4e-06
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 42 7e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 36 0.006
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 29 0.40
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 0.93
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 27 1.6
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 1.6
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 2.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 2.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 3.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 5.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 6.5
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 6.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 6.5
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 8.7
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 8.7
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 8.7
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 8.7
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 179 bits (435), Expect = 3e-46
Identities = 93/133 (69%), Positives = 105/133 (78%), Gaps = 2/133 (1%)
Frame = +1
Query: 202 NGAPQTKVC-QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDD-TT 375
N AP+ V KLVLLG+SAVGKSSLVLRFVK QF +Y+ESTIGAAFLTQ + D+ T+
Sbjct: 4 NTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTS 63
Query: 376 VKFEIWDTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVI 555
VK EIWDTAGQERY SLAPMYYR A AIVVYDIT + +AK+W+KELQRQA IVI
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVI 123
Query: 556 ALAGNKSDLAAKR 594
ALAGNK DLA +R
Sbjct: 124 ALAGNKLDLAQER 136
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 134 bits (325), Expect = 7e-33
Identities = 62/123 (50%), Positives = 84/123 (68%)
Frame = +1
Query: 232 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQE 411
FK VL+G+S VGKS+L++RF + +F+ +STIG F T+ I D+ +K +IWDTAGQE
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 412 RYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAK 591
RY ++ YYRGA A++VYDIT Q +F W+KEL+ A +IVI L GNK+DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHL 130
Query: 592 RMV 600
R V
Sbjct: 131 RAV 133
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 134 bits (323), Expect = 1e-32
Identities = 58/124 (46%), Positives = 87/124 (70%)
Frame = +1
Query: 229 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 408
+FKLV LGE +VGK+SL+ RF+ QF ++TIG FL++ + +D TV+ ++WDTAGQ
Sbjct: 11 KFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 70
Query: 409 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAA 588
ER+ SL P Y R + AI+VYDITN ++F + W+++++ + ++I L GNK+DLA
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLAD 130
Query: 589 KRMV 600
KR V
Sbjct: 131 KRQV 134
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 131 bits (317), Expect = 7e-32
Identities = 59/125 (47%), Positives = 82/125 (65%)
Frame = +1
Query: 232 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQE 411
FKL+L+G+S VGKS L+LRF + E STIG F + + TVK +IWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 412 RYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAK 591
R+ ++ YYRGA I+VYD+T+QD+F K W++E+ R A + L GNKSD+ K
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDK 128
Query: 592 RMVEF 606
++VE+
Sbjct: 129 KVVEY 133
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 114 bits (274), Expect = 1e-26
Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRF----DDTTVKFEIWDTA 402
K+VL G S GKS L+ RFVK Q+ + T+G F ++ I +K +IWDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 403 GQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDL 582
GQE++ S+A YYRGA A++VYD+TN+D+F +W+ +++ A +I + LAG+KSDL
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDL 130
Query: 583 AAKRMV 600
+R V
Sbjct: 131 QNQRQV 136
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 111 bits (267), Expect = 8e-26
Identities = 50/124 (40%), Positives = 76/124 (61%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
KL+L+G+S VGKS L+LRF + F +TIG F + I D +K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKR 594
+ ++ YYRGA +++YD+T++ +F + W +++ AS ++ L GNK D +R
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQR 130
Query: 595 MVEF 606
V F
Sbjct: 131 QVSF 134
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 110 bits (264), Expect = 2e-25
Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 5/127 (3%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
K+++LGES VGK+S++ ++V +F + ++TIGA FLT+ + DD V ++WDTAGQER
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPS----IVIALAGNKSDL 582
+ SL +YRGA ++VYD+ N +F +W E QASPS L GNK D+
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
Query: 583 -AAKRMV 600
KRMV
Sbjct: 130 EEQKRMV 136
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 103 bits (248), Expect = 2e-23
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
K+V+LG+S VGK+ L+ +FV +F ++TIGA FLT+ + DD V ++WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASP---SIVIALAGNKSDL- 582
+ SL +YRGA ++VY++ N +F +NW +E Q S + + GN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 583 AAKRMV 600
A+KR V
Sbjct: 130 ASKRAV 135
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 81.4 bits (192), Expect = 9e-17
Identities = 43/129 (33%), Positives = 71/129 (55%)
Frame = +1
Query: 211 PQTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEI 390
PQ V FKLVL+G+ GK++ V R + G+F + +T+G + + F +
Sbjct: 4 PQN-VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNV 62
Query: 391 WDTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGN 570
WDTAGQE+ L YY Q I+++D+T++ T+ +W ++L R +I I L GN
Sbjct: 63 WDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGN 121
Query: 571 KSDLAAKRM 597
K D+ +++
Sbjct: 122 KVDVKERKV 130
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 78.6 bits (185), Expect = 7e-16
Identities = 35/115 (30%), Positives = 65/115 (56%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
K+ ++G+S++GK+SL++ +V+G F E T+G F+ + I +T + F IWD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSD 579
+ ++ PM A + + ++D++ + T K W ++ R + + V L G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQ-ARGFNKTAVPILIGTKYD 125
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 74.5 bits (175), Expect = 1e-14
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = +1
Query: 217 TKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWD 396
T + ++KLV++G+ VGKS+L ++ ++ F + + TI ++ + D ++ D
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLD 62
Query: 397 TAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQR-QASPSIVIALAGNK 573
TAGQE Y ++ Y R + ++VY+IT++ +F + +++ R + + + L NK
Sbjct: 63 TAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANK 122
Query: 574 SDLAAKRMV 600
DL A+R+V
Sbjct: 123 CDLEAERVV 131
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 71.7 bits (168), Expect = 8e-14
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +1
Query: 214 QTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIW 393
Q++ + KLV++G+ A GK+SL+ F G F T+ +++ R D +V+ +W
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLALW 61
Query: 394 DTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGR-AKNWVKELQRQASPSIVIALAGN 570
DTAGQE Y L PM Y A +V + I + D+ + W++E+ P++ L G
Sbjct: 62 DTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI-NTLCPNVPFILVGM 120
Query: 571 KSDL 582
K+DL
Sbjct: 121 KADL 124
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 67.7 bits (158), Expect = 1e-12
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
K+V+LG+ A GK+SL+ F KG F + E TI ++ I D +++ +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD-IFVDGNSIELSLWDTAGQEE 73
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL 582
Y L + Y ++ + + ++D+ W+ E+ P + + L K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDL 129
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 67.3 bits (157), Expect = 2e-12
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
KLV++G+ A GK+ L++ F KG F E T+ ++ + D V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL 582
Y L P+ Y + ++ + + + D+ + W+ E+ S S+ I L K+DL
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCS-SLPILLVACKADL 122
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 65.7 bits (153), Expect = 5e-12
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
++ +LG +VGKSSL +++V+ F E TI F ++ I++ EI DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAK-NWVKELQRQASPSIVIALAGNKSDLAAK 591
Y L + G ++VY IT++ +F K K L + + I + GNKSDL +
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQ 126
Query: 592 RMV 600
R V
Sbjct: 127 RAV 129
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 65.3 bits (152), Expect = 7e-12
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
KLV++G+ A GK+ L++ F KG F E T+ ++ + D ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL 582
Y L P+ Y + ++ + + ++ + W+ E+ S ++ I L G K DL
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-NLPILLVGCKVDL 122
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 60.5 bits (140), Expect = 2e-10
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTV-KFEIWDTAGQE 411
KLV++G+ GK+ L++ F G F E T+ ++T ++ V + +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 412 RYHSLAPMYYRGAQSAIVVYDITNQDTFGR-AKNWVKELQRQASPSIVIALAGNKSDLAA 588
Y L P+ Y + ++ + I + + W E+Q P I L G K+DL
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQ-HFCPRTPIVLVGLKADLRK 134
Query: 589 KR 594
R
Sbjct: 135 DR 136
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 53.2 bits (122), Expect = 3e-08
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 414
K V++G+ AVGK+ L++ + +F T+ + + D ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 415 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAK-NWVKELQRQASPSIVIALAGNKSDL 582
Y L P+ Y +V + +T+ +F K W E+ P + + G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGTQIDL 119
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 46.0 bits (104), Expect = 4e-06
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +1
Query: 229 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 408
+ ++++LG A GK++++ + Q T+G F + + + + +KF +WD GQ
Sbjct: 21 EMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVG--FNVETVTYKN--IKFNVWDVGGQ 75
Query: 409 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKEL--QRQASPSIVIALAGNKSDL 582
++ L Y+ G + I V D + + A+ + + R+ +++ LA NK DL
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLA-NKQDL 134
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 41.9 bits (94), Expect = 7e-05
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Frame = +1
Query: 229 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 408
+ +++++G A GK++++ + G+ TIG F + + + + + F +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYRN--ISFTVWDVGGQ 71
Query: 409 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKE-LQRQASPSIVIALAGNKSDL 582
++ L Y++ Q I V D +++ A ++ L ++ + NK DL
Sbjct: 72 DKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 35.5 bits (78), Expect = 0.006
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Frame = +1
Query: 229 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 408
+ +++LLG GK++++ + +E T G T + ++F IWD GQ
Sbjct: 16 EVRVLLLGLDNAGKTTILKCLLNEDVNEVSP-TFGFQIRTLEVE----GLRFTIWDIGGQ 70
Query: 409 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKEL--QRQASPSIVIALAGNKSDL 582
+ + Y+ ++ I V D + +N ++EL + + + ++ LA NKSD+
Sbjct: 71 KTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLA-NKSDV 129
Query: 583 A 585
+
Sbjct: 130 S 130
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.40
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 144 SYNNREGYGDKQDRSRTEAQWRSTDKSLPVQAG 242
S ++R+G GDK+ RS T++ W S KS+ +G
Sbjct: 7 SDDSRDGEGDKRLRSTTKSTWLSFLKSIATFSG 39
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 0.93
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +1
Query: 235 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ--AIRFDDTTVKFEIWDTAGQ 408
K++L+G S GKSS+ V + +GA + +RF V +WD GQ
Sbjct: 4 KVLLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 409 ERY-----HSLAPMYYRGAQSAIVVYDITNQD 489
E + + +R Q I V+D+ +++
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 201 GPLCGSGPVCRHIPPCYCSSVLNFFLGDRSSRSRRDTEIIINYTLKQ 61
G + SG HI P Y S VLN +G R T +I+ L++
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRK 196
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 565 PPERSLSTERPAVGVPSPSSWRDRM 491
P L+ R ++G PSPS+W +R+
Sbjct: 370 PKAEYLNQSRASMGNPSPSNWNNRL 394
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 270 LAYRRLAQQHQLELADFCLWSAIGPLCGSGPVCRHIPPCYCSSVLNFFLGDRSS 109
+A + Q +LE ++ W+ +G L R CY S+L L +RSS
Sbjct: 914 VAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLL---LNERSS 964
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 299 PLTNRSTSEDLPTADSPNNTSLN 231
P N TS+DL DSPN + +N
Sbjct: 376 PSENSDTSDDLTKVDSPNKSLVN 398
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 238 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTT----VKFEIWDTAG 405
+V+ GE+ GKS+ V++F+ + E + TQ R + V FE T G
Sbjct: 596 VVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVG 655
Query: 406 QERYHSL 426
+E +S+
Sbjct: 656 KEVGYSV 662
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 344 RNAAPMVLSWYSWNCPLT-NRSTSEDLPTADSPNNTSL 234
++ A V+ +W CPLT N +T + L ++P++ SL
Sbjct: 109 KSGAVRVIPPDNWKCPLTINTTTFKFLTRKNNPSSMSL 146
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 311 SWNCPLTNRSTSEDLPTADS 252
S N P N T EDLPT D+
Sbjct: 263 SENVPKPNAETQEDLPTIDA 282
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 597 HALGCEVALVARQSDHYRRRGLPLEFLHPVLGATECVLISYIIYYNSRLGS 445
H GC V A + H R+ + E L +L T+ +Y++ + R GS
Sbjct: 552 HPYGCRVIQRAIEHCHSERKLIIEELLPHILKLTQDQYGNYVVQHILRTGS 602
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 395 SQISNLTVVSSNRMAWVRNAAPMVLSWYSWNCPLTNRSTSEDLPTADSPNNTSLN 231
S +S+ T ++ +R A +N L++ S P ++ STS S N TS+N
Sbjct: 225 SSVSS-TYLTQDREASSKNCLSKALAFSSIEPPASSASTSPRNTPTPSNNGTSIN 278
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 387 DLGYSWTGEVSQLSADVLQRSPICYCSI 470
D G S G+V L+ +R PI YC +
Sbjct: 149 DKGVSAMGQVISLNVRHSERRPIIYCDV 176
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 266 PTADSPNNTSLNWQTFVCGAPLGLCAAPVLFVAIS 162
P+ +P +NW V GAP+ A +++ AIS
Sbjct: 486 PSVKNPTPAEMNWTCLVFGAPM---LAVLIWYAIS 517
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 398 VSQISNLTVVSSNRMAWVRNAAPMVLSWYSWNCPLTNRSTSEDLPTADSPNNT 240
+S L +S +A R VLS+ N P+ S+SE T + NN+
Sbjct: 65 LSSSKTLAELSKGELAKAREDLKSVLSFLKNNLPVDTESSSEAF-TIEKDNNS 116
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Frame = -2
Query: 598 PCAWLRGRSC-----CPPERSLSTERP 533
PC + R +C CP SL TERP
Sbjct: 46 PCKFFRNGTCTAGENCPFSHSLETERP 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,809
Number of Sequences: 5004
Number of extensions: 53888
Number of successful extensions: 200
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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