Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b19
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.8  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.8  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    26   5.8  

>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 118 MYAYKIANVQRDYSLNLHECFYSSK 44
           MYA KI NV+RD     HE    SK
Sbjct: 37  MYAVKIYNVERDIQRYRHEAQLLSK 61


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 LIKLQTYSETIRLTYTSAFIVAKILGPF 28
           L KL +Y  +  +   S F+V+  +GPF
Sbjct: 147 LCKLYSYENSFIVVLNSIFVVSSCIGPF 174


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 123  IHIRKQFYSVEMFLNCILHL*FPLLMPSSIAFCLSSI 233
            I I K+FY+VE  +  +    F LLM S+    L ++
Sbjct: 1028 IFISKEFYTVEQMVQVLSLATFTLLMASTCIMSLPNV 1064


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 139 CFLICIYMYAYKIANVQRDYSLNLH 65
           CF  C  ++ + I  +Q+DYSL+++
Sbjct: 242 CFEHCKIVHDWDIKKIQKDYSLDVY 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,299
Number of Sequences: 5004
Number of extensions: 43798
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)