Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b19
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-12|CAB63385.1|  131|Caenorhabditis elegans Hypothetical...    28   7.1  
AF022971-3|AAG23977.1|  474|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AL132952-12|CAB63385.1|  131|Caenorhabditis elegans Hypothetical
           protein Y51H4A.21 protein.
          Length = 131

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 100 QFYKHTYIYILESNFTVLKCF*IVYYICDFLCSCPLPLLFVCHL 231
           +F++  +  IL S +T  KC  I+Y++  F+C   + + F+ +L
Sbjct: 88  KFHQQGFQLILPSQYTKYKCKKIIYFL--FICFSAVSITFLQNL 129


>AF022971-3|AAG23977.1|  474|Caenorhabditis elegans Hypothetical
           protein C31B8.7 protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 139 CFLICIYMYAYKIANVQRDYSLNLHECFYSSKNFRSL 29
           CF+  ++M++    N+Q  Y ++L +  + S +  SL
Sbjct: 14  CFISFLFMFSRNTCNIQEQYGISLLQLPFFSNSTESL 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,031
Number of Sequences: 27780
Number of extensions: 242765
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)