Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b18
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    30   0.38 
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   3.5  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    26   6.2  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   6.2  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   8.2  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    25   8.2  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    25   8.2  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 546 AKALPPGQILPLVKLTITPDGVHLETINHGTKQDDFEHMAVFFNI 680
           A   PP Q L L K T  P  +HL   +  + ++ F  + VF N+
Sbjct: 279 ANVSPPAQSLQLPKSTSNPADLHLSIASASSHKNIFSGLDVFSNV 323


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 490 EGCGASSTPGNQWISWWLQRKLYL 561
           +GC  +S P  +W SW L +++++
Sbjct: 107 QGCLGASQPHREWASWSLNQQVHV 130


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 513 TRKPVDLMVAAAKALPPGQILPLVKLTITPD--GVHLETINHGTKQDDFE 656
           T KPV +M  + K +   ++L LVK+  + D  G+ ++ I  G      E
Sbjct: 849 TDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIARGESDSSVE 898


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 677 VKEYRHMFEVVLFCAMVYGLQVDSVRSDREF 585
           +K++RHM E V F  ++Y LQ   VR   +F
Sbjct: 511 LKQFRHMDESVPFDDLIYKLQNILVRELTDF 541


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 475 PRYFT*NVNGRSSTVTGPSFSAIFHVKFT*LDIGLS*RSRTLRFFQW 335
           P+  T ++  R+ TVTGP  +   +++   +DI +  +  T++F  W
Sbjct: 14  PKGVTVDIKARNVTVTGPRGTLKQNLRH--VDIEMKKQGNTIKFIVW 58


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 622 VSKWTPSGVIVSFTRGRIWPGGKAFAAATMRST 524
           + +W+ SG I+  T    WP   A+   T R+T
Sbjct: 118 IFQWSASGSIICDTLASSWPTCIAYVVDTPRAT 150


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 307 VQRLCFIFPHLCTFTDIK-QLINHHYYTFKPE 215
           +Q++C +F H  T  D + Q++   Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,210
Number of Sequences: 5004
Number of extensions: 68348
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)