Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b18
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    31   0.69 
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    29   3.7  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    28   6.4  
01_04_0082 + 15835137-15836312                                         28   6.4  
04_04_0757 - 27822139-27823530                                         28   8.5  

>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -3

Query: 669 IPPYVRSRLVLCHGLWSPSGLRQE*S*VSPEAGSGPEVKLSLQPP--*DPLVSW---CA* 505
           +PP+++   +L  GL  P GL+   + ++P   SGP+    LQPP    P  +       
Sbjct: 211 LPPHLQQPPLLQPGLSVPQGLQY--AGLNPTLSSGPQKLSELQPPLLQPPGTTQGPSSGI 268

Query: 504 CPTTLARRSVQGTSPETS 451
            PTT A  S    SPETS
Sbjct: 269 LPTTTAPSSANLLSPETS 286


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 414 ENEGPVTVDDLPLTFQVKYLGQSDARGLWGIKHTRKPVDL 533
           E E PV   + P  F + + G +D   L+GIK+T+K ++L
Sbjct: 353 EVEEPVQ-SNKPADFDLLFAGDTDDEFLFGIKYTKKSMNL 391


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -3

Query: 582 PEAGSGPEVKLSLQPP*DPLVSWCA*CPTTLARRSVQGTSPETSMVDHLPSQDLRS 415
           P A   P  K S + P  P   WC  CP++L         P TS V+ LP   L S
Sbjct: 375 PLATQYPLPKDSTEQPFKPYYCWCPPCPSSLQYSVTPLHMPVTS-VEPLPLPPLSS 429


>01_04_0082 + 15835137-15836312
          Length = 391

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 697 PYDMLSMLKNTAICSKSSCFVPWFMVSKWTPSGVIVSFTRGRIWPGGKAF 548
           P +  + +   AI S  +    WFM  KW PS  I    +  +  GGK F
Sbjct: 172 PVERWACISKVAIFSSRNS--TWFMDDKWEPSNQISVDCQPHVLLGGKLF 219


>04_04_0757 - 27822139-27823530
          Length = 463

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 582 VKLTITPDGVHLETINHGTKQDDFEHMAVFFNIESISYGRP 704
           V L IT     LE + HG       H      +ES+SYG+P
Sbjct: 331 VGLVITGWAPQLEILAHGATAAFMSHCGWNSTMESLSYGKP 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,557,746
Number of Sequences: 37544
Number of extensions: 467038
Number of successful extensions: 1095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)