Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b18
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 679 MLKNTAICSKSSCFVPWFMVSKWTPSGVI 593
           +LKNT I    S +  +  VSKW   G I
Sbjct: 486 VLKNTEIFKDKSDWFDYSEVSKWVQKGQI 514


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 483 RSVQGTSPETSMVDHLPSQDLRSQPFST*NSHNS 382
           R +    P T+MV HLP Q L S+       H+S
Sbjct: 99  RKLPPLHPHTAMVTHLP-QTLTSENVEILLEHSS 131


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 384 SYVNFTWKMAENEGPVT 434
           S+ +F  KM  N GPVT
Sbjct: 888 SFNHFVLKMGINHGPVT 904


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/36 (25%), Positives = 14/36 (38%)
 Frame = -2

Query: 604 SGVIVSFTRGRIWPGGKAFAAATMRSTGFLVCLMPH 497
           SG  +   +G +W      A      +GF+  L  H
Sbjct: 763 SGYGIGLQKGSLWADAVTLAILDFHESGFMESLDNH 798


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,603
Number of Sequences: 438
Number of extensions: 4931
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)