Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b17
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    27   1.2  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    25   6.2  

>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +1

Query: 103 DCGPFAVXPVLVTSSYPTXCEESPACYPCLPHCPQSMVYCCDTRPKTP--LRRSSC 264
           DC  F +   L  +     C      YP L   P   +YCCD  P+    +++ SC
Sbjct: 46  DCY-FGLPDKLPLTILEVGCGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 69 LSRFKICNYILHNLLFTT 16
          L RFK C Y+ H L+  T
Sbjct: 6  LKRFKGCEYLTHRLVLAT 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,953
Number of Sequences: 5004
Number of extensions: 18953
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)