Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b17
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0135 + 18460416-18460482,18460614-18460942                       30   0.86 
03_05_0821 - 27960414-27961253                                         29   1.1  

>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 89  IAILKTAVRSLXPRFLLHLRIXPDVRNHPRATRACHTAHNLWFTVVT 229
           I+  KT      PR LLHL + P  RN    TR C    +L    ++
Sbjct: 63  ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 131 FLLHLRIXPDVRNHPRATRACHTAHN 208
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,957,440
Number of Sequences: 37544
Number of extensions: 127740
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)