Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28b17
(417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 27 7.2
U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 26 9.5
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 26 9.5
AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical ... 26 9.5
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +1
Query: 139 TSSYPTXCEES---PACYP-CLPHCPQSMVYCCDTRPKTPLRRSSCXDS 273
T++ P+ C ++ P C P CLP C Q + P P S C S
Sbjct: 221 TNNCPSICSQANCIPQCMPRCLPTCIQQIQISVPLPPPAPRCDSMCMPS 269
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Frame = +1
Query: 85 QYCYPEDC-GPFAVXPVLVTSSYPTXCEES-----PACYPCLPHCPQS-MVYCCDTRP 237
Q C C P PV S CE+S PA C+P C Q C T+P
Sbjct: 111 QSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCVQTQP 168
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Frame = +1
Query: 85 QYCYPEDC-GPFAVXPVLVTSSYPTXCEES-----PACYPCLPHCPQS-MVYCCDTRP 237
Q C C P PV S CE+S PA C+P C Q C T+P
Sbjct: 111 QSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAPVQCVPQCQQQCQQQCVQTQP 168
>U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical
protein F07C4.6 protein.
Length = 204
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 94 YPEDCGPFAVXPVL-----VTSSYPTXCEESPACYPCLPHCPQSMVYCCDT 231
YPE+ F P+L TSS PT + A + HCP++ CC T
Sbjct: 65 YPEEGSSFQ-RPLLCFTTGTTSSSPTSKDAKTAA---IAHCPKTCGLCCQT 111
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical protein
C09D8.1b protein.
Length = 1467
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 382 LKRAXGLNPNDKGAVGSFC 326
LKR LNPND G + S C
Sbjct: 1092 LKRVKTLNPNDAGPIISHC 1110
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 382 LKRAXGLNPNDKGAVGSFC 326
LKR LNPND G + S C
Sbjct: 1805 LKRVKTLNPNDAGPIISHC 1823
>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
protein C09D8.1c protein.
Length = 1216
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 382 LKRAXGLNPNDKGAVGSFC 326
LKR LNPND G + S C
Sbjct: 841 LKRVKTLNPNDAGPIISHC 859
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical protein
C09D8.1b protein.
Length = 1467
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 382 LKRAXGLNPNDKGAVGSFC 326
LKR LNPND G + S C
Sbjct: 1092 LKRVKTLNPNDAGPIISHC 1110
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 382 LKRAXGLNPNDKGAVGSFC 326
LKR LNPND G + S C
Sbjct: 1805 LKRVKTLNPNDAGPIISHC 1823
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 382 LKRAXGLNPNDKGAVGSFC 326
LKR LNPND G + S C
Sbjct: 1112 LKRVKTLNPNDAGPIISHC 1130
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 382 LKRAXGLNPNDKGAVGSFC 326
LKR LNPND G + S C
Sbjct: 1825 LKRVKTLNPNDAGPIISHC 1843
>AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical
protein F14H12.3 protein.
Length = 257
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 97 PEDCGPFAVXPVLVTSSYP-TXCEESPACYPC 189
P C PV++ + P T C + PAC C
Sbjct: 198 PPPCNTCNTQPVVIVTPAPCTTCYQPPACSTC 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,946,138
Number of Sequences: 27780
Number of extensions: 116215
Number of successful extensions: 300
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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