Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b16
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 107 QSSPLCPFAVNIINDQNVK 163
           + SPLCP A  + N  ++K
Sbjct: 207 EQSPLCPPAPRLTNSNSIK 225


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 516 GAGCKQHSSPQVPSAPTPQ 572
           G+ C+ H SP   +AP PQ
Sbjct: 439 GSACRIHGSPATTAAP-PQ 456


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 211 LKKLGYNARVLVTAGCTT 264
           +K +GY  R LV   C T
Sbjct: 87  IKIVGYKGRALVVVSCVT 104


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 211 LKKLGYNARVLVTAGCTT 264
           +K +GY  R LV   C T
Sbjct: 87  IKIVGYKGRALVVVSCVT 104


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 210 TPDPSKSYRDFSLY 169
           TPD +K+ R+F++Y
Sbjct: 33  TPDNNKTVREFNVY 46


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 399  SYCPANRPPRCENTTCPTNSDKEKASNNSASKPCPLGRCGAGCKQHSSP 545
            SY PA+ P        PT++   +    +AS P  L R        SSP
Sbjct: 886  SYKPASTPGCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSP 934


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 128 FAVNIINDQNVKMQ*SEKSL*DLLG 202
           FAVN +N   +K++     L DLLG
Sbjct: 213 FAVNFMNVMRMKLKQFMPRLYDLLG 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,533
Number of Sequences: 438
Number of extensions: 5409
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)