Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b10
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical ...    31   0.86 
U64844-6|ABC71797.1|  174|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z75714-7|CAB00064.2|  270|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U67954-6|AAV28344.1|  452|Caenorhabditis elegans Wrapper/rega-1/...    28   8.0  
U67954-5|AAM54179.1|  444|Caenorhabditis elegans Wrapper/rega-1/...    28   8.0  
U67954-3|AAM54178.1|  436|Caenorhabditis elegans Wrapper/rega-1/...    28   8.0  
AF456363-1|AAL60234.1|  443|Caenorhabditis elegans immunoglobuli...    28   8.0  
AF456362-1|AAL60233.1|  435|Caenorhabditis elegans immunoglobuli...    28   8.0  
AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical
           protein K03H6.6 protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 139 GYFLFKDSLELTFFNIAFNKVILYIICLNYCTLNFLLKKT 20
           G    K+ L  TFF +AF + IL  IC+ +C   FL+  T
Sbjct: 230 GTMFEKNPLAFTFFFLAFRRKILQTICI-FCACYFLIPFT 268


>U64844-6|ABC71797.1|  174|Caenorhabditis elegans Hypothetical
           protein T22F3.12 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 633 KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDL 740
           KV++ +   +GA LG L   L  E CP+TC+ F+ L
Sbjct: 4   KVFMDITA-DGAPLGKLVFELNTEKCPKTCENFVKL 38


>Z75714-7|CAB00064.2|  270|Caenorhabditis elegans Hypothetical
           protein ZC434.4 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 432 FKEIRKDNLQLYKRIVKAKARVQTTAE-LIEDWKTKHREIEKDTTMLYPYGPLAEDHAYI 608
           F  + KD+  LY+++  ++ ++Q  A+  +E + T+  E  K+    Y      ++  +I
Sbjct: 139 FPSVLKDSTTLYRKLFPSEEQIQEMADTYVERYDTEQTEARKEAKRKYSE---PDEDGWI 195

Query: 609 STQRTEATKVYITLRVREGAVLGVL 683
           +  + +     + L+  +  ++G L
Sbjct: 196 TVTKAKKAAKSVKLKKEDVPLIGGL 220


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 701 REQNHREHSQHRSLSHPQRYVHLGSFSSLCRNVSVVLRKGPIRI 570
           ++Q+  EH +    SH + +  + + S+LC   S V    P ++
Sbjct: 409 KQQSREEHDKMSDKSHEEEHTSVSTDSALCSETSEVRGPSPYKL 452


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = -2

Query: 403 GLTGNFNQLQSTLPRKKCCLFILNNRLMLVA*ICRFCCVHCSKLRYIGAELNLGGDVSTT 224
           GL  NF+ L +TL    CC  I+ N ++L+  I   C ++         ++ +   ++T 
Sbjct: 203 GLVNNFSLLFNTLFWMTCC--IITNFILLLLLIKSRCLLNAQTRSMHSYKVEVSLSLTTF 260

Query: 223 AVMLEYLCVCFRFLC 179
           +++  YL      +C
Sbjct: 261 SMIFSYLSNAMIVIC 275


>U67954-6|AAV28344.1|  452|Caenorhabditis elegans
           Wrapper/rega-1/klingon homologprotein 1, isoform e
           protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 241 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 62
           GD+S  A   +Y C     L  +  ++ +SG      L  D  ELT+   AF+K++ Y +
Sbjct: 292 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 350

Query: 61  C 59
           C
Sbjct: 351 C 351


>U67954-5|AAM54179.1|  444|Caenorhabditis elegans
           Wrapper/rega-1/klingon homologprotein 1, isoform b
           protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 241 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 62
           GD+S  A   +Y C     L  +  ++ +SG      L  D  ELT+   AF+K++ Y +
Sbjct: 284 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 342

Query: 61  C 59
           C
Sbjct: 343 C 343


>U67954-3|AAM54178.1|  436|Caenorhabditis elegans
           Wrapper/rega-1/klingon homologprotein 1, isoform a
           protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 241 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 62
           GD+S  A   +Y C     L  +  ++ +SG      L  D  ELT+   AF+K++ Y +
Sbjct: 276 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 334

Query: 61  C 59
           C
Sbjct: 335 C 335


>AF456363-1|AAL60234.1|  443|Caenorhabditis elegans immunoglobulin
           domain-containingprotein WRK-1B protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 241 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 62
           GD+S  A   +Y C     L  +  ++ +SG      L  D  ELT+   AF+K++ Y +
Sbjct: 283 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 341

Query: 61  C 59
           C
Sbjct: 342 C 342


>AF456362-1|AAL60233.1|  435|Caenorhabditis elegans immunoglobulin
           domain-containingprotein WRK-1A protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 241 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 62
           GD+S  A   +Y C     L  +  ++ +SG      L  D  ELT+   AF+K++ Y +
Sbjct: 275 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 333

Query: 61  C 59
           C
Sbjct: 334 C 334


>AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical
           protein T07H3.3a protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +3

Query: 393 PVRPKRHDARSHYFKEIRKDNLQLYKRIVKAKARVQ-TTAELIEDWKTKHREIEKDTTML 569
           P+R +R  AR  YF  I+K+  Q  + + +   +V+ + A+L E  K+     E D   L
Sbjct: 275 PIRVERSRAREDYFDFIKKEVDQEMETVKEMARKVKLSNAKLEESLKSHSNADEAD---L 331

Query: 570 YPYGPLAEDHAYISTQRTEATKVYITLRV 656
             +  +  D A ++    +     +T R+
Sbjct: 332 MKFLEIRHDKAVLTDATVDVVLQVVTARL 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,886,430
Number of Sequences: 27780
Number of extensions: 296561
Number of successful extensions: 887
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)