Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28b06
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 29 0.83
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 28 1.1
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 1.9
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 3.4
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 4.4
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 4.4
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 4.4
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 7.8
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 28.7 bits (61), Expect = 0.83
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +3
Query: 303 SETFIKTNPMCDLNCIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDNA 482
S++ I P + +Y F++ + ++L F +P DG R N+ V A
Sbjct: 638 SDSVISAVPPAEYASRFYKFVESSIKPTL--LVLKPFPLKPQDGQRVNKQQSVNAGNVRT 695
Query: 483 LNKY 494
NK+
Sbjct: 696 NNKH 699
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +3
Query: 300 SSETFIKTNPMCDLNCIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDN 479
SS T + N + D++ ++ EK R LLS+F K+ + N++ DV+ E +
Sbjct: 370 SSPTVSRANSVIDVD----AYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLD 425
Query: 480 ALNKYKTRLEAIKKILREKRAKMKTLESEGKP 575
N+ L KK+ E K + SE P
Sbjct: 426 NNNESDIGLTVKKKV--ENGNAWKQIFSERAP 455
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 354 YSFIKEKFRIAFNGILLSYFTKRPNDGNRGNE-SVDVTAEKDNALNKYKTRL 506
Y+ ++ + R+ + +L ++ + PN + S VTA+ +NAL KYK+ +
Sbjct: 90 YTVVEPRLRLKLDQLLATWKQRPPNSSSLEPVFSPIVTAKIENALLKYKSTI 141
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 677 YFINVNDCINVI--IRLGYLVFLRELNPSY 594
YF+N VI IR GYL+ R NPSY
Sbjct: 169 YFMNTTPSRLVINLIRSGYLILKRFANPSY 198
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 435 NRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTL 557
N N + + K +NK K + E +KK ++E A KT+
Sbjct: 61 NIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTV 101
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 135 KMALKTGLMEITSNIYKTKMIGAFKRNEDILS-RNFYKDI 251
+ L G++E+T+ + ++I KRN D L R F+K++
Sbjct: 441 RKCLLQGVIELTNLGHNLELINFIKRNGDPLEWRKFFKNV 480
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 186 TKMIGAFKRNEDILSRNFYKDINIEQHQNYLLKEETEK 299
+++IG RNE + +Y D++ + Q ++L+ K
Sbjct: 43 SRIIGQLWRNESAQVKKYYSDLSALERQKHMLENPEYK 80
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 4.4
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 171 SNIYKT--KMIGAFKRNEDILSRNFYKDINIEQHQNYLLKEETEKSSETFIKTNPMCDLN 344
+N+ K K++G+ R+ D+ N Y ++Q N LK + + E ++ + M DL
Sbjct: 184 ANVLKAGKKLLGSASRDYDVNPAN-YSTHYLQQLSN--LKSRLDLAGE-YLDDSIMNDLG 239
Query: 345 CIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKI 524
S K + S +P D +E+V ++A + NAL + +++ +K+
Sbjct: 240 DNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSENVHLSARQRNALKRKARQMKNSQKV 299
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 402 LSYFTKRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESEGKPNK 581
+ YF +R + +S T++ ++++NK + ++E K+ E+ K K SE P +
Sbjct: 65 VEYFRQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKEDNVEQEIKQKRSLSE-SPQE 123
Query: 582 S 584
S
Sbjct: 124 S 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,441
Number of Sequences: 5004
Number of extensions: 53027
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -