Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b06
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    29   2.4  
AC024755-10|ABS19458.1|  245|Caenorhabditis elegans Hypothetical...    29   2.4  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    29   3.1  
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    28   7.2  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    28   7.2  
AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z68106-2|CAA92126.2|  402|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   9.5  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    27   9.5  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 417 KRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAK 545
           +RPND +  + SVD  AE++    K K   +A KK  +EK++K
Sbjct: 542 RRPNDTD-SDVSVDSEAEEERRRKKAKKEKKAAKKHKKEKKSK 583


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +3

Query: 177 IYKTKMIGAFKRNEDILSRNFYKD-INIEQHQN------YLLKEETEKSSETFIKTNPMC 335
           +++  ++GA   NE    R +Y D   IE  +N      Y+  E   K++E F    P C
Sbjct: 12  LFRVTLVGAILPNETFDVRRYYADRFLIEDEENGSSRSYYISAESKAKAAEQFALLAPNC 71

Query: 336 DLNCI 350
            L  +
Sbjct: 72  SLTSV 76


>AC024755-10|ABS19458.1|  245|Caenorhabditis elegans Hypothetical
           protein Y34B4A.2 protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/70 (27%), Positives = 38/70 (54%)
 Frame = +3

Query: 468 EKDNALNKYKTRLEAIKKILREKRAKMKTLESEGKPNKS*FSIARVQFS*KD*ITKSDND 647
           EK+     YKT++E ++K++  KR  +   E + K +K  +   ++    +   T++DN+
Sbjct: 63  EKEVKCKSYKTQIEMVQKLILAKRRII--YEVQEKIDKKNYDKMKLVEKTEGLGTQADNN 120

Query: 648 IDTVININKI 677
           +DT +   KI
Sbjct: 121 VDTKLKNIKI 130


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 169 VISINPVFRAIFTNTRCLWNCFYRSKYWLALFTFFYIS---KFLFATFHGILIPSFID 5
           V+S+  +F   +     +WN  +   + L L  +F+ +    FLF   + ++I  F+D
Sbjct: 30  VLSVTSIFTCSYFIKTFIWNSTFHPNFKLLLTMYFFAAIFHSFLFTASYLMMIERFLD 87


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
 Frame = +3

Query: 207 KRNEDILSRNFYKDINIEQHQNYLLKEETEKSSETFIKTNPMCDLNCIYYSFIKEKFRIA 386
           +R  + +    +   + +   + L    T K  +  +K     +   I+YS+  E  R  
Sbjct: 334 RREHEFIKAKSFAGFSFKDIVSNLSSSTTVKRGKVVVKPERY-NSTWIHYSYHDENRREI 392

Query: 387 FNGILLSYFTKRPNDGNRGNESVDVTAEKDNALNK--YKTRLEAIKKILREKRAKMKTLE 560
            +  L+    +RP D N  NE  DV      ALN+    + +EAI + L + R   K ++
Sbjct: 393 ESPNLVH--VQRPLDENSDNEMTDVWQIDFGALNETIRSSDIEAIDRDLAKIRKSSKVMK 450

Query: 561 SEGK 572
              K
Sbjct: 451 IASK 454


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
            protein F11C3.3 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 426  NDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESE 566
            ND    NE  D TA+   A  K +  +EA+KK +++    ++  ESE
Sbjct: 932  NDQLADNE--DRTADVQRAKKKIEAEVEALKKQIQDLEMSLRKAESE 976


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
            F11C3.3 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 426  NDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESE 566
            ND    NE  D TA+   A  K +  +EA+KK +++    ++  ESE
Sbjct: 932  NDQLADNE--DRTADVQRAKKKIEAEVEALKKQIQDLEMSLRKAESE 976


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
            protein.
          Length = 1966

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 426  NDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESE 566
            ND    NE  D TA+   A  K +  +EA+KK +++    ++  ESE
Sbjct: 935  NDQLADNE--DRTADVQRAKKKIEAEVEALKKQIQDLEMSLRKAESE 979


>AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical
           protein Y70G10A.3 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 240 YKDINIEQHQNYLLKEETEKSSETFIKTNPMCDLNC--IYYS 359
           Y+D++IE+  ++ +           ++ NP+CD N   +YYS
Sbjct: 436 YEDLSIEKMHDFSISSTCNADCHCKMEWNPVCDRNTGHMYYS 477


>Z68106-2|CAA92126.2|  402|Caenorhabditis elegans Hypothetical
           protein F41E7.3 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 342 NCIYYSFIKEKFRIAFNGILLSYFTKRPNDG 434
           N I Y+F+ E FR  F  ++   F +RP  G
Sbjct: 307 NPILYAFMNETFREEFAKVVPCLFARRPGTG 337


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 447 ESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTL 557
           ESV +TAE++  L++ K  L+ +   L E R ++  L
Sbjct: 661 ESVSITAEREVHLSQQKHHLQQVSSQLNEARKEITEL 697


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 94  KYWLALFTFFYISKFLFATFHGILIPSFI 8
           KYW  +F FF +   L++     LIP  I
Sbjct: 142 KYWNLIFIFFCLGSILYSCICNSLIPGHI 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,172,256
Number of Sequences: 27780
Number of extensions: 283408
Number of successful extensions: 881
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)