Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28b05
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132... 62 6e-10
08_01_0896 + 8830912-8830984,8831088-8832389,8832502-8832756,883... 33 0.24
07_03_0750 - 21226896-21227011,21227116-21227370,21227469-212287... 32 0.42
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 31 0.73
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984... 30 1.7
03_01_0560 + 4162206-4162607 30 1.7
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 30 1.7
05_07_0084 - 27587307-27589175 28 6.8
07_03_0748 - 21191457-21191509,21191845-21192099,21192198-211935... 28 9.0
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 28 9.0
>02_01_0195 +
1327071-1327187,1328060-1328203,1328340-1328431,
1329393-1329579,1329676-1329831,1329959-1330012
Length = 249
Score = 61.7 bits (143), Expect = 6e-10
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Frame = +2
Query: 428 RLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXX 607
R G LL L G S+GPL++ D SI++TA +GT + F CF+ AA++A+R +
Sbjct: 90 RFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRREYLYL 149
Query: 608 XXXXXXXXXSMS-LMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFD 742
+ L ++F S + +Y GL++ G++++D
Sbjct: 150 GGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYD 195
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 235 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDV 330
++ P V+ HLK VY TL + +++ G Y+ V
Sbjct: 28 QISPAVQSHLKLVYLTLCVALAASAVGAYLHV 59
>08_01_0896 +
8830912-8830984,8831088-8832389,8832502-8832756,
8832908-8833011
Length = 577
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -2
Query: 396 AINMSIRPAPTMADKNPAWNLVNININPSRCRDACHH*CG 277
A ++ +P+P++ D NP+W + + +R ++A + CG
Sbjct: 449 AASIVFKPSPSICDPNPSWCVAKSEVGDARLQNALDYACG 488
>07_03_0750 -
21226896-21227011,21227116-21227370,21227469-21228785,
21228918-21228984
Length = 584
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 405 SGVAINMSIRPAPTMADKNPAWNLVNININPSRCRDACHH*CG 277
SG A + +P+P++ D NP+W + + +R ++A + CG
Sbjct: 450 SGAAF-IVYKPSPSICDPNPSWCIAKPEVGDTRLQNALDYACG 491
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 344 AGFLSAIVGAGLMLMLIATPD-NGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSII 520
AG LS++ AG L + ++ T+ +G ++GFG+ G ++ V S +
Sbjct: 222 AGLLSSLAAAGTWLQVASSYGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWV 281
Query: 521 ITALLGTTLVFVCF 562
I+ L+G + F+ +
Sbjct: 282 ISPLMGAAVSFIVY 295
>07_03_0739 -
21096684-21096742,21096822-21097076,21097206-21098498,
21098616-21098688
Length = 559
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 378 RPAPTMADKNPAWNLVNININPSRCRDACHH*C 280
+P+P++ D NP+W + N + R + A + C
Sbjct: 452 KPSPSICDPNPSWCVANAEVGDMRLQAALDYAC 484
>03_01_0560 + 4162206-4162607
Length = 133
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 329 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 478
F F G A+ A L L+L+A D + G+L G LT S+G
Sbjct: 58 FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -2
Query: 588 RSASIAAAEKHTNTRVVPSRAVIMID------GSTTLTYSSRGPMLMPDVNPNPSR*PSR 427
R++++ ++EK + VP +++ G T + SS GP D+N P+R P +
Sbjct: 37 RTSAVVSSEKESANSFVPHNGTGLVERISNDAGLTEVVGSSAGPTECIDLNKTPARKPKK 96
Query: 426 K 424
K
Sbjct: 97 K 97
>05_07_0084 - 27587307-27589175
Length = 622
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 609 PRNSQL-PRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRG 478
P S+ P +AS A H+ + V+P V++ G+T Y+ G
Sbjct: 446 PEGSRFRPLAASTVARMYHSTSAVLPDATVLVAGGNTNAAYNFSG 490
>07_03_0748 -
21191457-21191509,21191845-21192099,21192198-21193502,
21194160-21194232
Length = 561
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 378 RPAPTMADKNPAWNLVNININPSRCRDACHH*CG 277
+P+ ++ D NP+W + N + R + A + CG
Sbjct: 456 QPSESICDPNPSWCIANPAVGDMRLQAALDYACG 489
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -2
Query: 657 TKVISDIDVNSVINVPPRNSQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRG 478
T V SD N V +V LP +AEK + + P+ +MID ++ LTY +G
Sbjct: 37 TVVTSDYGGNFVKDVCIDEGVLPHRK--ISAEKKLDEKSPPNFDFLMIDTNSDLTYGGKG 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,595
Number of Sequences: 37544
Number of extensions: 375788
Number of successful extensions: 795
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -