Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b04
         (338 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23C22 Cluster: Myb-like DNA-binding domain containing ...    36   0.24 
UniRef50_Q5D8F8 Cluster: SJCHGC09023 protein; n=1; Schistosoma j...    31   3.8  
UniRef50_Q6A7R1 Cluster: Transport system permease; n=1; Propion...    31   6.7  
UniRef50_Q2YSG3 Cluster: Putative uncharacterized protein; n=3; ...    31   6.7  
UniRef50_A3DAQ5 Cluster: Transposition protein; n=1; Shewanella ...    31   6.7  
UniRef50_Q7PDM5 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    30   8.8  
UniRef50_A0BJX4 Cluster: Chromosome undetermined scaffold_111, w...    30   8.8  

>UniRef50_Q23C22 Cluster: Myb-like DNA-binding domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Myb-like DNA-binding domain containing protein -
           Tetrahymena thermophila SB210
          Length = 836

 Score = 35.5 bits (78), Expect = 0.24
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 290 NNTLL*SLQWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLR 171
           N+TL  SL  + LN F +NF+  ++   F+DNQ + NN +
Sbjct: 540 NSTLFESLNALTLNNFDKNFNSALYDGNFMDNQNYHNNFQ 579


>UniRef50_Q5D8F8 Cluster: SJCHGC09023 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09023 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 133

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 22/67 (32%), Positives = 37/67 (55%)
 Frame = +1

Query: 121 LCSPIYFCRQITNSKIILRLLRCPWLSKNCS*NMKM*KF*EKTFSCIHCKLYNSVLLFHL 300
           LC+ ++ CRQ+TN  I+L+ ++ P L      NMK  K        +   LY SVL++ +
Sbjct: 70  LCACLHRCRQLTN--IVLQFIQSPELHVIHLVNMK--KICLAKSPNVLIVLYLSVLVYRM 125

Query: 301 NIVIKST 321
           N+++  T
Sbjct: 126 NMLLHGT 132


>UniRef50_Q6A7R1 Cluster: Transport system permease; n=1;
           Propionibacterium acnes|Rep: Transport system permease -
           Propionibacterium acnes
          Length = 298

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 122 RHCYSPTKPTHCG*LGCFRYFFLISLVFVS 33
           RH + PT+PT  G +G  RY  LI +V +S
Sbjct: 18  RHAFDPTRPTLAGLIG--RYLLLIFVVIIS 45


>UniRef50_Q2YSG3 Cluster: Putative uncharacterized protein; n=3;
           Staphylococcus aureus|Rep: Putative uncharacterized
           protein - Staphylococcus aureus (strain bovine RF122)
          Length = 128

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 57  KKISETSKLTTMCWLGWAVAMSLFSYIFLSPNHK 158
           +K++E S+LT MC LGW   ++     FLS +HK
Sbjct: 91  QKLAE-SQLTLMCKLGWDNEINFVKISFLSHSHK 123


>UniRef50_A3DAQ5 Cluster: Transposition protein; n=1; Shewanella
           baltica OS155|Rep: Transposition protein - Shewanella
           baltica OS155
          Length = 500

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 221 IFYEQFLDNQGHLNNLRI 168
           +FYEQF  N G+LN LRI
Sbjct: 216 VFYEQFASNLGYLNGLRI 233


>UniRef50_Q7PDM5 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=5;
           Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
           PFEMP3 - Plasmodium yoelii yoelii
          Length = 1467

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 257 QLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFVIWRQKYIGEQRHCYSPTKP 96
           Q N+   N  I      F +   ++NN+ I    +I ++KYIG+QR     T P
Sbjct: 290 QRNLCKMNLFIKEAKLLFYNKTTNINNISIYCTTIIEKKKYIGQQRRLSFKTLP 343


>UniRef50_A0BJX4 Cluster: Chromosome undetermined scaffold_111, whole
            genome shotgun sequence; n=7; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_111, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 3035

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 260  IQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLF 156
            +Q   F Q+FHIF +Y++F   +G+  NL+ +  F
Sbjct: 2218 LQSEYFKQSFHIFDYYQEF--TKGNTINLKFLAQF 2250


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,178,514
Number of Sequences: 1657284
Number of extensions: 5561307
Number of successful extensions: 12658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12658
length of database: 575,637,011
effective HSP length: 88
effective length of database: 429,796,019
effective search space used: 10315104456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)