Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28b01
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1697 - 28795521-28797328,28797430-28797550                       30   1.7  
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008...    29   3.9  
03_05_0821 - 27960414-27961253                                         29   3.9  
01_05_0135 + 18460416-18460482,18460614-18460942                       29   5.1  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    28   6.8  

>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 652 CYHYERKKPLSTHNACAPPHSSCQLCAS 735
           C H  R  P S H+ C PPH   Q C S
Sbjct: 355 CCHDARHGP-SCHHGCCPPHHGKQACTS 381


>06_03_1075 +
           27399279-27399376,27399449-27399555,27400791-27400898,
           27401763-27401860,27401983-27402033,27402137-27402228,
           27402360-27402459,27402765-27402884,27402977-27403045,
           27403299-27403345,27403428-27403483,27404760-27404800,
           27405155-27405260,27406728-27406860,27406937-27407357
          Length = 548

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 733 RRRADTKSEEVRKHCESTEVSFFRNDNKGYPGSVIMSAH-DC*PVHPQNGNDEPRRRDQL 557
           R R + K E+  ++C+  E S  R+D++GY      S + D    + +        RD+ 
Sbjct: 469 RDRGNQKHEDYNRYCKPGERSSSRHDDRGYSKHESRSKYRDGDDDYRRQSGGSRYGRDKC 528

Query: 556 DKKFLRRAYDAHG 518
           D +   R  D HG
Sbjct: 529 DGERRYRGDDDHG 541


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 FLLHLRIQPDVRNHPRATRACHTAHN 205
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 86  IAILKTAVRSL*PRFLLHLRIQPDVRNHPRATRACHTAHNLWFTVVT 226
           I+  KT      PR LLHL + P  RN    TR C    +L    ++
Sbjct: 63  ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 152 VGYEDVTRTGATANGPQSSG*QYCIFINFYPVLKFVI 42
           V  EDV R  A  N     G + C+F+  Y   KF I
Sbjct: 448 VNTEDVIRARANRNNNDDPGNRLCVFVRDYYCYKFQI 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,760,212
Number of Sequences: 37544
Number of extensions: 379490
Number of successful extensions: 1048
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)