Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a23
         (714 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1259|AAF58673.1|   65|Drosophila melanogaster CG13211-P...    40   0.004
AY113250-1|AAM29255.1|  138|Drosophila melanogaster AT13707p pro...    32   0.89 
AE013599-1260|AAF58675.2|  138|Drosophila melanogaster CG13211-P...    32   0.89 

>AE013599-1259|AAF58673.1|   65|Drosophila melanogaster CG13211-PA,
           isoform A protein.
          Length = 65

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 183 MVDLSGGSDGPLEHAFSNTVFIIPGIIFVSLSVFFGYKLYKSI 311
           MVDL+     P + +  +  F +P I+  +L+  FGYKLYKS+
Sbjct: 1   MVDLTDAGS-PFQQSIPDFAFYVPAIVVFTLAALFGYKLYKSL 42


>AY113250-1|AAM29255.1|  138|Drosophila melanogaster AT13707p
           protein.
          Length = 138

 Score = 31.9 bits (69), Expect = 0.89
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
 Frame = +3

Query: 108 IIARI-EHTTYLEITFETNNLLAIIKMVDLSGGSDGPLE-----HA-FSNTVF--IIPGI 260
           ++ RI E  + LE   ET+  + + +M D    + G +E     HA F+ T    I+  +
Sbjct: 37  LVQRIGEMQSKLESLAETDRHVFLAEMKDKFQQTIGRIEERIVQHAHFAQTYSSSIVSAV 96

Query: 261 IFVSLSVF--FGYKLYKSI 311
           IF+ +S+F  FGYKLYKS+
Sbjct: 97  IFLLVSIFALFGYKLYKSL 115


>AE013599-1260|AAF58675.2|  138|Drosophila melanogaster CG13211-PB,
           isoform B protein.
          Length = 138

 Score = 31.9 bits (69), Expect = 0.89
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
 Frame = +3

Query: 108 IIARI-EHTTYLEITFETNNLLAIIKMVDLSGGSDGPLE-----HA-FSNTVF--IIPGI 260
           ++ RI E  + LE   ET+  + + +M D    + G +E     HA F+ T    I+  +
Sbjct: 37  LVQRIGEMQSKLESLAETDRHVFLAEMKDKFQQTIGRIEERIVQHAHFAQTYSSSIVSAV 96

Query: 261 IFVSLSVF--FGYKLYKSI 311
           IF+ +S+F  FGYKLYKS+
Sbjct: 97  IFLLVSIFALFGYKLYKSL 115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,893,336
Number of Sequences: 53049
Number of extensions: 393481
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)